Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02311 ATGGCAGCTATGATGGATTTTTACAGTAGTAACTCACAGTTTCACAGCTCAGATCCATTTAGAGGTGAATTAATGGAAGTTCTTGAACCTTTTATCAAAAGTCCTTCCTCAAATTCAAATTCAAATTCAAATTCAGATTCAATTTCAATCTCAAATTCAACCCAATCACCTTCTTATTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTTTCTACCTTCTTTCTCTTCTCTTCCTCCTCTTTACTCAGATGGTTGTTATAGCCAAAACTTCTTAGGCTTTTCTCAACCATCTACTTCTTCTTCTCTTCTTGGTCTTAACCACTTAACACCATCTCAAATCAACCAGATCCAAGCTCAAATTCAACAACAAAACTTTACCATGCAACAACAACGTCTTAGTAATACTCTGAGTTTTCTAAGTCCAAAACCGATCCCTATGAAGCACGTGGGAAATAATCCATCAAAACCCACGAAGCTATACAGAGGGGTGAGACAAAGACACTGGGGAAAATGGGTTGCTGAGATAAGATTACCAAAGAATCGTACTAGGCTTTGGCTTGGTACTTTTGATACAGCTGAAGAAGCTGCTTTAGCTTATGATAAAGCTGCTTATAAACTTCGTGGTGACTTTGCTAGGCTTAATTTCCCAAATCTTAAACATCAAGGTTCTTGTATTGGTGGTGAATTTGGTGAGTTTAAGCCTCTTCCTTCTTCTGTTGATGCTAAACTTCAAGCTATTTGTGAAGGTTTAGCTGAGATGCAGAAACAAGGAAAGACAGAGAAACCTAAGAAAACACCGGCAGCTCGGTCGAAAGTTAAGGCGGCGGCGGCGACTGTAGCAGTTGAGGATTCTGTTATTGATTTGAAGAAGGATTCAGAGGGTTGTTGTAAGGTTGAAGTTTCATCTTCTTCTCCAGTGAGTGAAGGTGGTGGTTCTTCTGAAGGATCTTCTCCACTTTCTGATCTTACTTTTGGTGATGTTGGTGAGCCACAGTGGGAGGGTGATTTAGATAATTTTAATTTGCTAAAATACCCCTCTTATGAGATTGATTGGGATAATCTGTGA 1077 0.39 MAAMMDFYSSNSQFHSSDPFRGELMEVLEPFIKSPSSNSNSNSNSDSISISNSTQSPSYSSSSSSSSSSSSSPFLPSFSSLPPLYSDGCYSQNFLGFSQPSTSSSLLGLNHLTPSQINQIQAQIQQQNFTMQQQRLSNTLSFLSPKPIPMKHVGNNPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHQGSCIGGEFGEFKPLPSSVDAKLQAICEGLAEMQKQGKTEKPKKTPAARSKVKAAAATVAVEDSVIDLKKDSEGCCKVEVSSSSPVSEGGGSSEGSSPLSDLTFGDVGEPQWEGDLDNFNLLKYPSYEIDWDNL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02311 358 CDD AP2 162 222 IPR001471 GO:0003700|GO:0006355
Trre5g02311 358 Gene3D AP2/ERF domain 163 221 IPR036955 GO:0003700|GO:0006355
Trre5g02311 358 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 358 - -
Trre5g02311 358 MobiDBLite consensus disorder prediction 32 72 - -
Trre5g02311 358 SUPERFAMILY DNA-binding domain 163 220 IPR016177 GO:0003677
Trre5g02311 358 SMART rav1_2 163 226 IPR001471 GO:0003700|GO:0006355
Trre5g02311 358 FunFam Ethylene-responsive transcription factor 2 162 221 - -
Trre5g02311 358 MobiDBLite consensus disorder prediction 303 324 - -
Trre5g02311 358 ProSiteProfiles AP2/ERF domain profile. 163 220 IPR001471 GO:0003700|GO:0006355
Trre5g02311 358 PRINTS Ethylene responsive element binding protein signature 186 202 IPR001471 GO:0003700|GO:0006355
Trre5g02311 358 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Trre5g02311 358 MobiDBLite consensus disorder prediction 303 337 - -
Trre5g02311 358 Pfam AP2 domain 164 212 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02311 Trre-Chr5 17596255 17597331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02311 1 358 AP2-EREBP Transcription Factor Family AT1G78080 49.330 5.33e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre5g02311 AP2 8.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02311 K09286 - gmx:100800478 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02311 5 17596255 17597331 Trre5g02311 5 17596255 17597331 ECH
Trre9g03078 9 39189496 39190563 Trre5g02311 5 17596255 17597331 PCT