Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02291 ATGGATTCTCCAACTGATAAAGATATGGAAAAAAATAAGATAGATGAGAGAAACTTGTCATCTTCATACGACGAACCACCGTATGCATACAAAGTTGCAATTCCTCCAAAACAGAACTTATTCAAGGAATTTCAATACACTGTAAAAGAAACATTATTTGCTGATGATCCTCTAAGATCTTTCAAAGACCAAACTAAATCAAGAAAGTTACTCCTTGGTATTGAGTTCATATTCCCTATACTTAATTGGGGGAGAAGTTATAATCTTAAAAAATTTAGGGGAGATATTATATCTGGTCTCACTATTGCAAGTCTTTGCATACCTCAGGATATTGGATACTCCAAGCTTGCACATTTGGCTCCACAGTATGGACTGTATTCAAGCTTTGTTCCACCATTGATTTATGCTTTCATGGGTAGTTCTCGCGATATAGCAATAGGACCAGTGGCGGTGGTTTCTCTATTGTTAGGGACATTGCTTAGTAATGAAATTGATCCTGTTACACATGCAGCCGAATATCAAAGACTTGCTTTTACAGCCACTTTTTTTGCTGGGATTACACAAGCAACACTCGGTGTTTTCAGGTTAGGGTTCTTGATTGATTTCCTATCCCATGCTGCTATTGTTGGTTTTATGGGGGGTGCTGCTATCACTATTGCGCTTCAACAGCTAAAAGGTTTCCTCGGCATTAAAACAAAAAATTTCACCACAAAAACAGATATTGTCAACGTGTTGCGTGCAGTATTCTCATCAGCCGAACATGGATGGAACTGGCAAACGATATTAATCGGAGCTAGCTTTTTGAGTTTTCTTCTGGTCGCCAAATTTATTGGAAAGAAGAACAAAAAACTCTTCTGGGTGCCAGCGATTGCGCCATTGATATCCGTTGTGTTATCCACTTTTTTTGTATTCATAACACGCGCAGATAAGCAAGGAGTCGAAATCGTAAATCACATAGAGAAAGGGATCAATCCTTCATCTGTTCATAAAATTTATTATACCGGTGACTACCTTGGGAAAGGTTTTAAAATCGGCGTCACGGCAGGCATGATAGCACTAACTGAAGCCATAGCTATTGGAAGAACATTTGCATCTATGAAGGATTATCAATTGGACGGAAACAGAGAAATGGTGGCATTAGGAACGATGAATGTCGTTGGTTCGATGACTTCTTGTTATGTGGCAACTGGTTCTTTCTCTCGGTCGGCGGTAAACTACATGGCTGGCTGCCAAACTGCCGTCTCGAATATTGTGATGTCAGTGGTTGTGTTTTTAACACTACAATTCATAACTCCTCTTTTTAAGTACACTCCAAATGCCATTCTCGCCTCCATCATCATTTCTGCTGTCATCAGCCTTGTGGACTATCAGGCAGCAATTTTGATTTGGAAGATTGATAAATTCGATTTTGTTGCGTGTATGGGAGCTTTCTTTGGGGTTGTTTTCGTCTCGGTTGAGATAGGACTCCTAATTGCTGTTTCAATATCTTTTGCAAAGATCCTATTACAAGTAACAAGACCAAGAACAGCTATTTTGGGAAAGATTCCTAGGACAACTGTCTATAGAAACATCCAACAATACCCTGAAGCTAGTAAGGTTCCTGGTGTAATGATTGTAAGGGTTGATTCTGCAATATATTTTTCCAACTCCAACTATGTTAAAGAAAGGATATTAAGATGGCTAACAGATGAAGAAGCAGTGAAAGGAGATTACAAAACAAGAATTCAGTTTTTGATAGTTGAAATGTCACCCGTTACTGACATAGATACCAGTGGCATCCAAGCCTTTGAAGAGTTACATAAAAGTCTTGTGAAAAGAGGTGTTCAGCTTGTTCTGGCAAATCCTGGATCAACAGTGACAGACAAACTTTACACATCAAATTTTGCTAACATAATTGGAGAGGACAAGATTTTCCTCACTGTTGCAGAAGCTGTTGCATATTGTTCTCCAAAGCTAGATGTGAACCCTTGA 1971 0.3896 MDSPTDKDMEKNKIDERNLSSSYDEPPYAYKVAIPPKQNLFKEFQYTVKETLFADDPLRSFKDQTKSRKLLLGIEFIFPILNWGRSYNLKKFRGDIISGLTIASLCIPQDIGYSKLAHLAPQYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLLGTLLSNEIDPVTHAAEYQRLAFTATFFAGITQATLGVFRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKTKNFTTKTDIVNVLRAVFSSAEHGWNWQTILIGASFLSFLLVAKFIGKKNKKLFWVPAIAPLISVVLSTFFVFITRADKQGVEIVNHIEKGINPSSVHKIYYTGDYLGKGFKIGVTAGMIALTEAIAIGRTFASMKDYQLDGNREMVALGTMNVVGSMTSCYVATGSFSRSAVNYMAGCQTAVSNIVMSVVVFLTLQFITPLFKYTPNAILASIIISAVISLVDYQAAILIWKIDKFDFVACMGAFFGVVFVSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEASKVPGVMIVRVDSAIYFSNSNYVKERILRWLTDEEAVKGDYKTRIQFLIVEMSPVTDIDTSGIQAFEELHKSLVKRGVQLVLANPGSTVTDKLYTSNFANIIGEDKIFLTVAEAVAYCSPKLDVNP 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02291 656 Pfam Sulfate permease family 92 474 IPR011547 GO:0016020
Trre5g02291 656 MobiDBLite consensus disorder prediction 1 26 - -
Trre5g02291 656 NCBIfam sulfate permease 79 644 IPR001902 GO:0016020|GO:0055085
Trre5g02291 656 CDD STAS_SulP_like_sulfate_transporter 527 641 - -
Trre5g02291 656 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g02291 656 Pfam STAS domain 527 644 IPR002645 -
Trre5g02291 656 PANTHER SULFATE TRANSPORTER 39 649 IPR001902 GO:0016020|GO:0055085
Trre5g02291 656 ProSitePatterns SLC26A transporters signature. 121 142 IPR018045 GO:0008271|GO:0008272
Trre5g02291 656 FunFam Sulfate transporter 31 506 651 - -
Trre5g02291 656 Gene3D STAS domain 506 651 IPR036513 -
Trre5g02291 656 SUPERFAMILY SpoIIaa-like 528 649 IPR036513 -
Trre5g02291 656 ProSiteProfiles STAS domain profile. 526 648 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02291 Trre-Chr5 17338541 17342177 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02291 4 652 Inorganic Solute Cotransporters AT1G22150 75.846 0.0 978
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02291 K17470 - gmx:100804208 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02291 5 17338541 17342177 Trre5g02291 5 17338541 17342177 ECH
Trre9g03103 9 39433088 39437436 Trre5g02291 5 17338541 17342177 PCT