Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02287 ATGACTTCATTTCCTTCTGATTCTTTCAATATGAGAGTCACAGAAGATGGAAATCTTCATCTTGAAGATACAAAGAGATCACAGTGGATACTAAACTCTCCAACTCCACCACCTCTATGGAAAAAGCTTATTACTCCACTCAAGAATAATAAGTTTTTTTCTTCATCCAAGAACAAAAAAACTTGCCATGAAAATGCTTTTTCTTTCTTTAGTAGTTTATTTCCAATCCTTGGTTTGTTCAAAAACTATGATGCTTTCAAGTTTAAAGATGATTTTCTAGCTGGTTTAACTCTTGCTAGCTTAAGCATACCTCAGAGTATAGGATATGCTAATTTAGCAAAACTTGATCCTCAATATGGCTTATACACAAGTGTGGTTCCTCCTCTTATCTATGCTGTGATGGGAAGTTCAAGAGAAATTGCAATTGGACCTGTAGCTGTAGTGTCACTATTGCTATCAACTCTTTGTCACAAAGTGGTTGATCCAGAGTTAAATCATGATGATTACAGAAATTTTGTCTTTACTGTAACATTATTTGCTGGAATCTTTCAAGTTGCATTTGGCGTTTTCAGGTTGGGATTTCTTGTGGATTTTCTGTCACATGCTGCACTTGTTGGATTCATGGCAGGTGCAGCCATCATGATTGGTCTTCAACAGCTTAAAGGGTTGCTTGGGATTAGTAACTTTACTAATAAATCTGATGTTGTTTCTGTTTTGGAATCTGTTTACAAATCACTTCGTCACCAAATTCCATCTGGAAAATGGTACCCTCTGAATTTTGTCATTGGATGTTCATTCCTAATTTTCCTTCTGTTTGCAAGATTTATGGGCAAAAGAAACAAAAAGCTATTCTGGTTGCCAGCTATTGCACCTCTTGTATCAGTTATATTATCAACTTTTATTGTATATATATCCAAAGCTGATAAGAATGGGGTTAATATAGTAAAACATGTCAAAAGAGGCCTTAATCCAAGCTCAATTCATCAATTACAACTCAATGGTGAACATGTTGGACAAGCAGCTAAAATTGGATTCATTTCTGCTGTTATTGCTCTCACTGAAGCAATGGCTGTTGGTAGATCTTTTGCTTCAATTAAAGGATACCATCTTGATGGAAACAAAGAAATGTTAGCAATGGGTTGTGGGAACATTGCAGGGTCTTTCACTTCATGCTATGTTGCAACTGGATCATTTTCAAGGACTGCAGTAAATTTCAGTGCAAGATGTCAATCATCAATATCAAACATTGTGATGGCAGTGACAGTAATTCTGTGCTTGGAATTGTTTACAAGACTGTTATATTACACACCTATGGCTATACTTGCTTCTGTAATCCTCTCGGCTCTTCCAGGATTAATTGACATTAGAGAAGCTTGTTATATATGGAAGGTTGACAAGTTTGACTTTCTTGCTTGTATTGGTGCTTTCTTTGGTGTCTTGTTTGTATCTGTAGAAACTGGTCTTCTTGTGGCTGTATCAATTTCGTTTTTAAAGATAGTAATACAATCAATTCGACCTGGAATAGAAGTTCTAGGTAGAATTCCAACAACACAAGCCTTTTGTGATGTTAGTCAATATCCCATGGCTACAAGCTCTCCAGGCATTTTGGTCATTCGTATAAGCTCTGGCTCACTCTGCTTTGCAAATGCTAATGTTGTTAGAGAAAGAATACTCAAGTGGGTCACTGAAGAAAATGGACTTAAAGAAACTACTACAGGAAATGTCCAAGCAATAATATTGGACATGACTAATTTGATGAATGTTGATACTTCTGGAATTATAGTATTGGAGGAATTGCACAAGAGGTTATTCTCCCGTGGCATAAAATTTGCTATGGTGAATCCAACGTGGTTAGTAATTCACAAGCTTAAAGTGGCACACTTTGTAGATAAAATTGGGAAAGAATGGGTTTTCTTTACAGTTGCTGAAGCTGTGGATGCATGCTTATCTTATAAATTTGCTAATCCATGA 1971 0.3617 MTSFPSDSFNMRVTEDGNLHLEDTKRSQWILNSPTPPPLWKKLITPLKNNKFFSSSKNKKTCHENAFSFFSSLFPILGLFKNYDAFKFKDDFLAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVVPPLIYAVMGSSREIAIGPVAVVSLLLSTLCHKVVDPELNHDDYRNFVFTVTLFAGIFQVAFGVFRLGFLVDFLSHAALVGFMAGAAIMIGLQQLKGLLGISNFTNKSDVVSVLESVYKSLRHQIPSGKWYPLNFVIGCSFLIFLLFARFMGKRNKKLFWLPAIAPLVSVILSTFIVYISKADKNGVNIVKHVKRGLNPSSIHQLQLNGEHVGQAAKIGFISAVIALTEAMAVGRSFASIKGYHLDGNKEMLAMGCGNIAGSFTSCYVATGSFSRTAVNFSARCQSSISNIVMAVTVILCLELFTRLLYYTPMAILASVILSALPGLIDIREACYIWKVDKFDFLACIGAFFGVLFVSVETGLLVAVSISFLKIVIQSIRPGIEVLGRIPTTQAFCDVSQYPMATSSPGILVIRISSGSLCFANANVVRERILKWVTEENGLKETTTGNVQAIILDMTNLMNVDTSGIIVLEELHKRLFSRGIKFAMVNPTWLVIHKLKVAHFVDKIGKEWVFFTVAEAVDACLSYKFANP 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02287 656 SUPERFAMILY SpoIIaa-like 531 648 IPR036513 -
Trre5g02287 656 PANTHER SULFATE TRANSPORTER 54 648 IPR001902 GO:0016020|GO:0055085
Trre5g02287 656 ProSitePatterns SLC26A transporters signature. 117 138 IPR018045 GO:0008271|GO:0008272
Trre5g02287 656 ProSiteProfiles STAS domain profile. 542 648 IPR002645 -
Trre5g02287 656 NCBIfam sulfate permease 75 644 IPR001902 GO:0016020|GO:0055085
Trre5g02287 656 Pfam Sulfate permease family 88 473 IPR011547 GO:0016020
Trre5g02287 656 Pfam STAS domain 526 644 IPR002645 -
Trre5g02287 656 Gene3D STAS domain 505 651 IPR036513 -
Trre5g02287 656 FunFam Sulfate transporter 31 505 651 - -
Trre5g02287 656 CDD STAS_SulP_like_sulfate_transporter 526 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02287 Trre-Chr5 17310221 17315510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02287 22 652 Inorganic Solute Cotransporters AT5G10180 61.033 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02287 K17469 - gmx:100805269 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02287 5 17310221 17315510 Trre5g02287 5 17310221 17315510 ECH
Trre9g03105 9 39451541 39455949 Trre5g02287 5 17310221 17315510 PCT