Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02285 ATGGTTCGTCAAGAGACACTTACTACTATGGATGAGCATGCTACACAAATCAAAAGTGAAGATGATATTAAAACAGCTGCTCAGAAAATCTTTGAGAATGTTGCTAGGCACGACGACAGCAAACCTGCCTTGGAGAAATGGATCGTCAATGCCTTTAGGGAGAGGAGAGCACTTGCTTTGACATTGGATAACACCAAAGCTGTAGTGAATAAATTTAACCGAATGCTTAGTGGTTTAGCTAGCAATATCGTAGTGTTTATTTGGCTCATCGTATTAAAAATTGCCACCATCAAAATTGTTATTCTTCTGGTGTCACAAATTGTCTTGTTTGCTTTTGTATTTGGAAACACTCTCAAGATCACATTTGAAGCAATCATATTCTTATTTTTCATGCACCCATATGATGTGGGAGATAGATGTGAAATTGATCAAATTGAGATGGTTGTAGAAGAAATTAATATATTCACCACTGTATTTCTGGGATCTGATAAGCAAAAAATAATACTCCCTAACAATATTCTTGCAACCAAGGCAATACACAATTTTTGTCGTTGTCCTGACTTGGAAGATTTTATTGACTTCTTCATCCATGTTGATACGTCTAATCTAAATATTTTAGAAATAAAATGCCGAGTTCACAATTTTGTTTAA 651 0.3502 MVRQETLTTMDEHATQIKSEDDIKTAAQKIFENVARHDDSKPALEKWIVNAFRERRALALTLDNTKAVVNKFNRMLSGLASNIVVFIWLIVLKIATIKIVILLVSQIVLFAFVFGNTLKITFEAIIFLFFMHPYDVGDRCEIDQIEMVVEEINIFTTVFLGSDKQKIILPNNILATKAIHNFCRCPDLEDFIDFFIHVDTSNLNILEIKCRVHNFV 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02285 216 Gene3D - 133 182 IPR023408 -
Trre5g02285 216 SUPERFAMILY Sm-like ribonucleoproteins 122 182 IPR010920 -
Trre5g02285 216 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 40 216 IPR016688 -
Trre5g02285 216 Pfam Mechanosensitive ion channel 83 201 IPR006685 GO:0016020|GO:0055085
Trre5g02285 216 FunFam Predicted mechanosensitive ion channel 133 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02285 Trre-Chr5 17301068 17308149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02285 4 216 Mechanosensitive Ion Channel Family AT1G53470 45.935 4.53e-64 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02285 K22048 - gmx:100789882 238.81