Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02280 ATGTCGTCTCCGTGTGCAGCGTGCAAGAATCAGCGAAGAAAATGCACAAAAGAATGCATTTTCGCACCCTATTTTCCGCCGGATAATCCTCAAAAATTTGCTTATGTACAAAAAGTCTTTGGTGCTAGTAACGTTGCAAAGCTACTCAATGAGGTTAGTATTTCACAGCGTGAAGAAGCTGCTAAGTCATTAGCTTATGAAGCGGAAGTGCGTTTGCGAGACCCTGTTTATGGCTGTGTTGGTCTTATTTCACAGCTTCAGAATCAACTAAGAAACTTGCAAAATGAACTTGTTATGGCCAAAAAAGAAATCGCATCTCTTCAAGCTATAGTTCCTCCGGCAGCGGCGACCGAGAGTTCTTATTTTTCGTTCAGTTCTTCTTCTGCTCAACAGAAACATGAGGTTTTCAACTTCAATGGTGATAACTCATTTTCTAGCTTTCAATTGTACCCTTTTCAAAAACAAACACAAACCCATAACCATTTTTTGTCAAAGAAGAAGTTGAAGGAAGAAAAAGAGAATCTTGATTAG 531 0.3936 MSSPCAACKNQRRKCTKECIFAPYFPPDNPQKFAYVQKVFGASNVAKLLNEVSISQREEAAKSLAYEAEVRLRDPVYGCVGLISQLQNQLRNLQNELVMAKKEIASLQAIVPPAAATESSYFSFSSSSAQQKHEVFNFNGDNSFSSFQLYPFQKQTQTHNHFLSKKKLKEEKENLD 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02280 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 145 - -
Trre5g02280 176 Coils Coil 83 110 - -
Trre5g02280 176 ProSiteProfiles LOB domain profile. 3 104 IPR004883 -
Trre5g02280 176 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02280 Trre-Chr5 17269507 17270037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02280 2 112 AS2 family AT5G66870 69.298 6.94e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre5g02280 LOB 2.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02280 - - mtr:25489402 200.29