Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02268 ATGGATATATACGAGCCATTCCCGCAAGTTAGCATGTGGGGTGACAGCTTTAAAGTTGAAGGTGGGTTGAATTCAATTGCTTCACCAATGTTATTGGTCAACACTACTACTAGCATGGAGAACAAGTCTGAATATATTCCTCATGAACCAAATGAGCCTTCTGAAGTCAATCAAGAGACTACAAATAAAGATGTTAGTAAGGTGCTACGACGCCTCGCTCAAAATCGAGAGGCTGCTCGGAAAAGTCGATTGCGCAAAAAGGCTTATGTTCAACAATTGGAAACAAGTAGATTGAAGCTTATGCAATTGGAGCTAGAGATTGGAAGAGCAAGAAAACAGGGTATGTGCACTGGCAATGCATTGGATACCAGATTTATGGGATCACCTGAAACAATAAATCCAGGGATTGTTGCGTTTGAAATTGAATATGGAAATTGGGTTGACGAGAACCATAGGCGGAATGAGGAGCTCAGAAATGTATTTCAAACTAATGCGCCCGAAGTGCAGCTTCGTCAAGTTGTTCAGAGTGTATTGAGCCATTACTCGGATCTTTTCAGAATGAAAGCGGATGCTGCAAAGGCCGATGTCCTCTATTTAATCTCCGGTGTGTGGAAACCATCCGTAGAGCGTCTTTTCCTATGGATCGGAGGAGCCCGCCCCTCGCAGCTTCTAAATCTCATTGTGCCGCAACTTGAGCTATTGACCGAATCACAAATGGCAAGCATTAAAAAACTTCACCTATCGTCTCAGCAAGCTGAAGATGCACTTTCACAAGGACTAGATAAACTTCAGCAGAGTCTGGTTCAAGACATGGCATTTGATCCATTAAGTGCAACAAATCATGGATTTCAGATGGCCATTGCTATAGGGAAATTCGAGGCACTAGAAGGTTTTGTAAGTCAGGCAGATCACCTTAGGCGGGAAACTCTGATACACATGTCACGAATCCTGTCTACGCACCAAGCTGCTAGGGGTTTGATTGCTCTCGGGGAATACTTTCATCGTCTTCGTACACTTGGTTCTCTTTGGACTTCTCGTCCATGTGACTCCGTGATATCGCCTAGGATTACTCCTTAG 1077 0.4392 MDIYEPFPQVSMWGDSFKVEGGLNSIASPMLLVNTTTSMENKSEYIPHEPNEPSEVNQETTNKDVSKVLRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLELEIGRARKQGMCTGNALDTRFMGSPETINPGIVAFEIEYGNWVDENHRRNEELRNVFQTNAPEVQLRQVVQSVLSHYSDLFRMKADAAKADVLYLISGVWKPSVERLFLWIGGARPSQLLNLIVPQLELLTESQMASIKKLHLSSQQAEDALSQGLDKLQQSLVQDMAFDPLSATNHGFQMAIAIGKFEALEGFVSQADHLRRETLIHMSRILSTHQAARGLIALGEYFHRLRTLGSLWTSRPCDSVISPRITP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02268 358 SMART brlzneu 63 123 IPR004827 GO:0003700|GO:0006355
Trre5g02268 358 Pfam Seed dormancy control 155 228 IPR025422 GO:0006351|GO:0043565
Trre5g02268 358 PANTHER TRANSCRIPTION FACTOR TGA9 1 348 - -
Trre5g02268 358 Pfam bZIP transcription factor 67 95 IPR004827 GO:0003700|GO:0006355
Trre5g02268 358 Coils Coil 86 113 - -
Trre5g02268 358 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700|GO:0006355
Trre5g02268 358 MobiDBLite consensus disorder prediction 43 63 - -
Trre5g02268 358 FunFam BZIP family transcription factor 66 115 - -
Trre5g02268 358 Gene3D - 66 116 - -
Trre5g02268 358 ProSiteProfiles DOG1 domain profile. 136 346 IPR025422 GO:0006351|GO:0043565
Trre5g02268 358 SUPERFAMILY Leucine zipper domain 67 99 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02268 Trre-Chr5 17173525 17175429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02268 1 347 Calmodulin-binding Proteins AT1G22070 51.359 2.92e-124 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre5g02268 DOG1 4.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02268 K14431 - gmx:100794268 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02268 5 17173525 17175429 Trre5g02268 5 17173525 17175429 ECH
Trre9g03144 9 39765554 39768814 Trre5g02268 5 17173525 17175429 PCT