Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02259 ATGAACCGCCAAGTGTTACCACCGTTACCGAAGAATGCAAGTTCACTCGACCCTAAAATCTGGCGAGCAATCGCCGGCGCCGCCGTGCAAATCCCCGCCGTGAATTCTAGGGTTTACTACTTCCCTCAAGGTCACATGGACCAAGCTTCTTCACTTCCTAACAATCTTTCACCTCAACTACTTTCACGTCCTTACATTCTCTGTACCGTTTCCGGTGTTCATTTTCTCGCCGATCCGAAAACCGATGAGGTTTTCGCTAAGCTTTTTCTTCAACCTTTGAATGATTTCACCGCTGTTTTTCCTCGTGCTCTTATTCATGAAGTTGATGATGGAGAGAGGATTTCTTCGTTTGCGAAGATTCTTACTCCTTCTGATGCTAACAACGGCGGTGGATTTTCCGTTCCGAGGTTTTGTGCTGATTCGATTTTTCCTCCGCTTGATTATACTATGGACCCTCCGTTTCAGTCTCTTTCGATCACCGATGTTCATGGCTTGACTTGGGAGTTCCGTCACATTTACCGTGGTACGCCGCGGCGACATCTGTTGACCACCGGTTGGAGTAGGTTCGTCAACGGTAAGAAGCTAGTCGCCGGTGATTCTGTTGTTTTTATGAAGAACACTAGAGGTACAATGTTCGTCGGGATCCGTCGCGCTGTTCGATTTGTTCCGGCTCGAAGTTGCGTCGGCTCTGAAGCGACGAGATTGTGTCTTCCGATTTGTGGAGTGAGAAATAGGGTGGATGATGAAGAGGATGAGAAGCTTCTGGAAGAGAAGTGTAAGGAGGGGTTTTCTAGGAATGGGAAAGGGAAGTTGTCGCCGAATTCGGTTGCGATGGCAGCGGAATTGGCCTCACAGGGTATGGCATTTGAAGTTGTTTATTATCCGAAAGCCGGTTGGTCGGATTTTGTGTTGAAAGCTGAAGTGGTGGATGCTGCTATGAGTGTTACTTGGTGTCCTGGAATGAGAATTAAAATGGCTGTTGAGACTGATGATTCTTCAAGGACTACTTGGTTTCAGGGTGTGGTGTCTTCAGTCAATGTTCCTGAGCATGGACCTTGGCGAGGTTCCCCTTGGCGCATGCTTCAGATTACATGGGACGAACCTGAAGTGTTGCAAACCTCCAAGTGGGTCAGCCCTTGGCAGGTCGAACTTCTTTCTACCACACCTTCACTTCATATACCATTCCCCTCAATGAAAAGGATTAGAGTGGGTTCTGGGGTGTTAACTGATGGAGATGGAGACCCCTTTTCTGTCACCGGATTCAATAATTCAACAATGGGACAATTTAGTCAAGCGTTGTTGAATTACGGAACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGTTTCAAGTTTTTCCAACTTTCCAGGCGATAACTCCCGTCTGTGTATGGGTAACTCTTTTAGCAACAACTCGGTGCCAGGGTTGAAATCTTTGTCAACTGAGCTAAATGTTGGCAGTTCTCAGTCTGGTGATTTTTCACCAGAGAGCCAGAGTAGTTTGCCTTCCTTTGGCACAGATTTTGTTCGGAACCTCAACTGCAGCTCAACGAAACCTGGGCCTGTATCGTTTCAGCTATTTGGTGCAGTCATTCAGACCGAACAGCCTGTTGAAAGTGGTTCACATGGTACTGGTAGCTCAGGAGATGATAGCAGTAAGGGATGCAATGACACTGAAGGCATTAACAATGCTCTTGAGGATTCTTTGACTTACTCGAAATTGCTTGACAGGCTTGATGGCCAGTGCCAAATTGCCTCAACTGTCGAGGCATGCTATTTGTGA 1794 0.471 MNRQVLPPLPKNASSLDPKIWRAIAGAAVQIPAVNSRVYYFPQGHMDQASSLPNNLSPQLLSRPYILCTVSGVHFLADPKTDEVFAKLFLQPLNDFTAVFPRALIHEVDDGERISSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYTMDPPFQSLSITDVHGLTWEFRHIYRGTPRRHLLTTGWSRFVNGKKLVAGDSVVFMKNTRGTMFVGIRRAVRFVPARSCVGSEATRLCLPICGVRNRVDDEEDEKLLEEKCKEGFSRNGKGKLSPNSVAMAAELASQGMAFEVVYYPKAGWSDFVLKAEVVDAAMSVTWCPGMRIKMAVETDDSSRTTWFQGVVSSVNVPEHGPWRGSPWRMLQITWDEPEVLQTSKWVSPWQVELLSTTPSLHIPFPSMKRIRVGSGVLTDGDGDPFSVTGFNNSTMGQFSQALLNYGTFPAGMQGARHDLFSVSSFSNFPGDNSRLCMGNSFSNNSVPGLKSLSTELNVGSSQSGDFSPESQSSLPSFGTDFVRNLNCSSTKPGPVSFQLFGAVIQTEQPVESGSHGTGSSGDDSSKGCNDTEGINNALEDSLTYSKLLDRLDGQCQIASTVEACYL 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02259 597 SUPERFAMILY DNA-binding pseudobarrel domain 113 223 IPR015300 -
Trre5g02259 597 Gene3D - 114 219 IPR015300 -
Trre5g02259 597 MobiDBLite consensus disorder prediction 539 563 - -
Trre5g02259 597 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Trre5g02259 597 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Trre5g02259 597 CDD B3_DNA 116 217 IPR003340 GO:0003677
Trre5g02259 597 SMART B3_2 117 219 IPR003340 GO:0003677
Trre5g02259 597 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre5g02259 597 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 559 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre5g02259 597 Gene3D - 317 390 - -
Trre5g02259 597 FunFam Auxin response factor 115 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02259 Trre-Chr5 17102699 17105449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02259 12 563 B3 DNA Binding Superfamily AT1G77850 48.858 4.87e-171 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre5g02259 B3 2.7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02259 - - qsu:112025063 688.723