Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02254 ATGCTTTCTCTCCTCTGCACCTTGTTATTGCCGCCGATGACCGGAGAACGATGTTACCGCCGGAAGAATACGACGGAAGAAGATTATCCCGCCGTTATAGAAGAGATGCCCTCTCCGGCTGATATTCCGGCGGAAATTCCGGCCGTGTTGGAGATTGATTACTTCTCGCAGGCGAGGAAAGCGCTTAGCGAACGTTGTCCTTTTGATGTTGCTGAGGAAACGTCCACTTCTGCTGCGGTTACTCTGCCGAGTGGGTTAGCTAGTTTGTTGAACCGTCATGGAGATAACCGGAAGCGCCACAAGAAGTCTCATTCCGGTGGCGGTGATAAAAAGAAGAAGAAATCTTCTAGGGCTAGCGAGAAATTGCGTAGTTTTAATGTTTGGGTTGAGACGGAGGAGTATTTTAGGGACTTGAATTTGTCTGATATTGATACTTTATTGGAAGCTTATTCGTCTTATAGTTTAGCTTCTCGTGAGTGTTTTACAATTCCGCAATTTGGAAATGCCACTGGGTTCAATGTAGTTAGTAGTGAGGATGAGAAGAAGCATTCTCCAATATTCAATGTAGTTAACAGTGAGAATGAGAAGAATGCTGTTGAAGAGGTAAACAACGAGAATGGTTCCTTGGGAATTGAGTTAAGTGATGTTGTTGAATTGGAAAAAGCTTTGCCACTTGATGATGATAAAAATTGTGATGCTTCTGATGATTCCTGTGTTAGTTTAGAGTGGTTTTTAGGTAGTAAGAATAGAATTTTTTTAGCTTCTGAGCGCCCGTCTAAGAAAAGGAAGCTTTTAGGTGGTGATGCTGGGTTGGAGAAAGTTGTAATGACTAGTCCTTCGGAAGGGGACCAACCTTATTGTCATTATTGTGGCAGTGGAGATTCTGGCACTGATTCCAATCGGTTAATAGTCTGCTCTTCTTGTAAAGTCGCAGTTCATCGGAAGTGCTATGGTATACATGACAATGTAGACGAGTCTTGGTTGTGTTCTTGGTGTAAGCAAAAGGGTGATGTTGATGACTCGGTGAGTCCTTGTGTTCTTTGCTCAAAGAAGGGTGGTGCTTTAAAACCAATTAATAGTGTTAATGAAGATGTTGGGTCTTCCCAGTTTGTGCACCTGTTTTGTGGTCTGTGGATGCCGGAGGTTTATATTGATGATTTGAAGAAGATGGAGCCTGTTATGAATGTGGGAGACATCAAGGAAACTAGAAGAAAATTGGTGTGTAATGTTTGCAAATTGAAATGTGGTGCATGTGTTCGGTGTACTCGTGGATCCTGCAGAACTCCTTTTCATCCTTTATGTGCAAGGGAAGCTAAACATAGAATGGAAGTTTGGGCAAAGTACGGTATTGATGATATTGAACTGCGGGCTTTTTGCTCGAAACACTCTGATCTACAAGAGAACAGAAACATCATGCCATTAGGAGGCTCTATTGCAGTTGGCAGTGAAATTCCAGAAGCTAATGACCTTCCAGTGACTTTGCCAGTGAAAAGTGAACACAATTTAAAAATTGGTTGCAGCAATGGAGGGTTGGAGTCTGATAGTAATCCAGACAAGTTGAACCATAATGATGAAACTCCTAACGGAGGATTATCTGTCTGTATGATTAGTGCTCAAGCTCAAAATATGTTGGGATGTGGCGCTGCGCCACCACATAATATTGGGGTGGCAGGGAGAACCAATGAGAATGTTAATGCCTCTGAATCCCCCAGTTTTGTACTTGTTTTGAGAAAGTTGATAGATAAAGGGAAAGTTGATGTAAGAGATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAGCTGCAAATATCAATGAAGCTTATATGGCCCCTGACGTGCAACACAAAATATTCAATTGGCTAAAAGCCCATGTGTATACCGGTGCATCTCATAAAAGCTTAAAAGCCAAATTCAAACCGGCCAATGTATCTATAAATGAAACTGGCGCTTCAGACGGTTCTGATACTTCACCGTTATCTGATTCAGGCTTGCTGGATCCTGTTGCTGTTAATGTTAAGTCTGTACCACCAAGGAGACGAACTATCAATAACATTAGGATTTTGAAGGATAATAAAGTTATATGTTCATCTGAGGGGGTTACCACTAGTGAGAATGGGGTGTCAATTGATAAGTTCCTAGTTTGTCAGCCTGAGTGTGAAAGTCTAGGACGTTCTGACAAAACATCAATTCCTGATGCCACTGAAACGAATTTAACCAAGTCTGAGGATATATTTCATGAGGTTCAAGGCAATGCTGATGAGCCCTACAAATCCAGCTTATCTGTATGCGTTTCAGAACAGAAGTCTGCTGCTTGCTTGCCGAATGCTTCTATGCTTTCAGATCAGCACTATCCAGCTCATTCTGCTTCAGAACCACCCGTTCCTGGTTTCATAAAAATGGAAGCAATCTCTAGTTACATTCACCCTTACATTAACAAGAAATTGCTGCAGATTCGTGATGGCTTGCCCTCAGGGGATCTTATGGGTTTAAGTGGCTACAGAAATTCTTTTATTGAACCCTTTGGAGCTAATAGCTGCTCAAGTAGTGAAAACCAGCAATTAATTTGCACCGACGTTTCCAAGGCTGATCAAGTAAAGGCAGAGCAGTTGGATAGGGATGAGTTGGAGGGGGAGCTTATATATTTTCAGAATAGACTGCTGCAGAAAGCAGTTGCAAAAAACAGGCTTACTGAAAAATTAGTCTACAATGTTGCCAAGATTTTGCCTCAGGAGATTGATAAAACACATCAACAAAGATGGGATGCTGTGATTGCTAATCAATATCTGTGTGATCTTAGGGAGGCAAAGAAACAAGGTAGAAAAGAAAAAAAGCACAAGGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCAGCAGCAGCATCATCTTCTAGGGTTTCTTCTTTACGTAAAGATACCATAGATGAATCTTTACAACAGAATTCATTAAAGTTGGATGCTTTAAGTGGGCGGACTGGTATATGTTCTCAGCCAATGCCACGTGCCAAAGAGACTCTTTCTAGAGTTGCTGTCACTAGAGCTTCAACAGAGAATTTTTCTCTGCCAAGCTCAGATTTTTCTAAGGGGCAACGTAAATCATGTGATATCTGCAGACGCTTTGAGAATATGTTAAATCCTATCCTAGTGTGCTCTGGTTGCAAGGTTGCAGTGCACTCAGTTTGCTATCGCAGTGTGAAGGAAACAACAGGTCCATGGTACTGTGAATTATGTGAAGATCTATTGTCAAGAAGTTCTGGTACATCTGATATAAATAGCTGGGAGAAGCCTTATTTTGTTGCAGAATGTGCTCTCTGTGGTGGTACTACCGGTGCTTTTAGGAAGTCATCTGATGGTCAATGGGTTCATGCCTTTTGTACCGAGTGGCTTTTTGAGTCTACATTCAAAAGAGGACAGACAGATGTTATTGAAGGAATGGAGACTGTGCCAAAAGGAGTTGATATTTGTTGCATCTGCCACCGCAAGCATGGTGTATGCATGAAGTGTTGCTATGGCCATTGCCTGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTTCATGATTGTGAGGACTGCTGCCGGGGGAAAGATGCAACACAAGGCTTACTGTGAAAAGCATAGTTCGGAGCAGAGAGCAAAGGCTGAAAATCAAAAGCATGGAGTTGAAGAGTTAAAAAGTATCAAGCAAATTAGGGTTGAACTTGAGAGATTACGCCTCCTTTGTGAAAGAATTGTCAAACGGGAAAAGATAAAGCGGGAATTGGTTCTATGCTCACACGACATACTAGCCTTTAAAAGAGATCATGTTGCTAGGTCTGTGCTTGTTCATAGTCCTTTCGTCCTTCCAGATGGTAGCTCAGAATCAGCTACAACATCCCTTAAAGCGACCACAGAGGGGTACAGATCGTGCAGTGAAGCTCTCCAAAGATCAGATGACGTAACTGTGGATAGCTCAGTTTCTGCTAAGCACCGTGTCAGAGTTGCCGTATCCATGGACACAGACCCAAAGTTGGATGATGACTGCTCAACCTCACAAAGTCACTATAACCACAAGATTCCAGAGAAAAAGCAATTTTCTGGCAAACAGATTCCTCGTAGAGCTTCTGCTACATCACGCAATATCTCTGAGGAGGACGGATGGAGATCCAAATCTCGAAAGTTACAGGCTACTGAAACATTTGGAAAAGAGCTTGTTATGACATCAGATGAAGCATCTATGAAGAATTCAAGGCTACCTAAAGGATATGCATATGTTCCCGCGGATTGCCTGTCAAATGACAAACAGTCTAATGAGGATGTATATGCTAGTGGACCAGGGGAACATGACAGGTAG 4338 0.4239 MLSLLCTLLLPPMTGERCYRRKNTTEEDYPAVIEEMPSPADIPAEIPAVLEIDYFSQARKALSERCPFDVAEETSTSAAVTLPSGLASLLNRHGDNRKRHKKSHSGGGDKKKKKSSRASEKLRSFNVWVETEEYFRDLNLSDIDTLLEAYSSYSLASRECFTIPQFGNATGFNVVSSEDEKKHSPIFNVVNSENEKNAVEEVNNENGSLGIELSDVVELEKALPLDDDKNCDASDDSCVSLEWFLGSKNRIFLASERPSKKRKLLGGDAGLEKVVMTSPSEGDQPYCHYCGSGDSGTDSNRLIVCSSCKVAVHRKCYGIHDNVDESWLCSWCKQKGDVDDSVSPCVLCSKKGGALKPINSVNEDVGSSQFVHLFCGLWMPEVYIDDLKKMEPVMNVGDIKETRRKLVCNVCKLKCGACVRCTRGSCRTPFHPLCAREAKHRMEVWAKYGIDDIELRAFCSKHSDLQENRNIMPLGGSIAVGSEIPEANDLPVTLPVKSEHNLKIGCSNGGLESDSNPDKLNHNDETPNGGLSVCMISAQAQNMLGCGAAPPHNIGVAGRTNENVNASESPSFVLVLRKLIDKGKVDVRDVALEIGISPDTLAANINEAYMAPDVQHKIFNWLKAHVYTGASHKSLKAKFKPANVSINETGASDGSDTSPLSDSGLLDPVAVNVKSVPPRRRTINNIRILKDNKVICSSEGVTTSENGVSIDKFLVCQPECESLGRSDKTSIPDATETNLTKSEDIFHEVQGNADEPYKSSLSVCVSEQKSAACLPNASMLSDQHYPAHSASEPPVPGFIKMEAISSYIHPYINKKLLQIRDGLPSGDLMGLSGYRNSFIEPFGANSCSSSENQQLICTDVSKADQVKAEQLDRDELEGELIYFQNRLLQKAVAKNRLTEKLVYNVAKILPQEIDKTHQQRWDAVIANQYLCDLREAKKQGRKEKKHKEAQAVLAAATAAAASSSRVSSLRKDTIDESLQQNSLKLDALSGRTGICSQPMPRAKETLSRVAVTRASTENFSLPSSDFSKGQRKSCDICRRFENMLNPILVCSGCKVAVHSVCYRSVKETTGPWYCELCEDLLSRSSGTSDINSWEKPYFVAECALCGGTTGAFRKSSDGQWVHAFCTEWLFESTFKRGQTDVIEGMETVPKGVDICCICHRKHGVCMKCCYGHCLTTFHPSCARSAGLFMIVRTAAGGKMQHKAYCEKHSSEQRAKAENQKHGVEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVHSPFVLPDGSSESATTSLKATTEGYRSCSEALQRSDDVTVDSSVSAKHRVRVAVSMDTDPKLDDDCSTSQSHYNHKIPEKKQFSGKQIPRRASATSRNISEEDGWRSKSRKLQATETFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNDKQSNEDVYASGPGEHDR 1445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02254 1445 SUPERFAMILY FYVE/PHD zinc finger 1026 1078 IPR011011 -
Trre5g02254 1445 MobiDBLite consensus disorder prediction 1333 1389 - -
Trre5g02254 1445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 465 IPR013083 -
Trre5g02254 1445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1099 1211 IPR013083 -
Trre5g02254 1445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 338 IPR013083 -
Trre5g02254 1445 ProSiteProfiles Extended PHD (ePHD) domain profile. 1099 1209 IPR034732 -
Trre5g02254 1445 MobiDBLite consensus disorder prediction 94 111 - -
Trre5g02254 1445 PANTHER PHD FINGER PROTEINS 97 973 - -
Trre5g02254 1445 ProSitePatterns Zinc finger PHD-type signature. 1034 1077 IPR019786 -
Trre5g02254 1445 SUPERFAMILY FYVE/PHD zinc finger 277 334 IPR011011 -
Trre5g02254 1445 SMART PHD_3 1033 1078 IPR001965 -
Trre5g02254 1445 SMART PHD_3 407 463 IPR001965 -
Trre5g02254 1445 SMART PHD_3 1154 1209 IPR001965 -
Trre5g02254 1445 SMART PHD_3 286 333 IPR001965 -
Trre5g02254 1445 MobiDBLite consensus disorder prediction 1333 1363 - -
Trre5g02254 1445 ProSitePatterns Zinc finger PHD-type signature. 287 332 IPR019786 -
Trre5g02254 1445 ProSiteProfiles Extended PHD (ePHD) domain profile. 342 463 IPR034732 -
Trre5g02254 1445 ProSiteProfiles Zinc finger PHD-type profile. 284 335 IPR019787 -
Trre5g02254 1445 CDD ePHD 1102 1208 - -
Trre5g02254 1445 MobiDBLite consensus disorder prediction 91 118 - -
Trre5g02254 1445 Coils Coil 1229 1249 - -
Trre5g02254 1445 Pfam PHD-finger 1045 1078 - -
Trre5g02254 1445 Pfam PHD-finger 300 333 - -
Trre5g02254 1445 MobiDBLite consensus disorder prediction 1422 1445 - -
Trre5g02254 1445 ProSiteProfiles Zinc finger PHD-type profile. 1031 1080 IPR019787 -
Trre5g02254 1445 Pfam PHD-zinc-finger like domain 344 462 - -
Trre5g02254 1445 Pfam PHD-zinc-finger like domain 1101 1208 - -
Trre5g02254 1445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1012 1085 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02254 Trre-Chr5 17050522 17060554 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02254 287 470 C2H2 Transcription Factor Family AT3G14740 28.877 1.48e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre5g02254 zf-HC5HC2H_2 6.6e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02254 - - tpra:123896915 2597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02254 5 17050522 17060554 Trre5g02254 5 17050522 17060554 ECH