Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02253 ATGCTTTCTCTCCTCTGCACCTTGTTATTGCCGCCGATGACCGGAGAACGATGTTACCGCCGGAAGAATACGACGGAAGAAGATTATCCCGCCGTTATAGAAGAGATGCCCTCTCCGGCTGATATTCCGGCGGAAATTCCGGCCGTGTTGGAGATTGATTACTTCTCGCAGGCGAGGAAAGCGCTTAGCGAACGTTGTCCTTTTGATGTTGCTGAGGAAACGTCCACTTCTGCTGCGGTTACTCTGCCGAGTGGGTTAGCTAGTTTGTTGAACCGTCATGGAGATAACCGGAAGCGCCACAAGAAGTCTCATTCCGGTGGCGGTGATAAAAAGAAGAAGAAATCTTCTAGGGCTAGCGAGAAATTGCGTAGTTTTAATGTTTGGGTTGAGACGGAGGAGTATTTTAGGGACTTGAATTTGTCTGATATTGATACTTTATTGGAAGCTTATTCGTCTTATAGTTTAGCTTCTCGTGAGTGTTTTACAATTCCGCAATTTGGAAATGCCACTGGGTTCAATGTAGTTAGTAGTGAGGATGAGAAGAAGCATTCTCCAATATTCAATGTAGTTAACAGTGAGAATGAGAAGAATGCTGTTGAAGAGGTAAACAACGAGAATGGTTCCTTGGGAATTGAGTTAAGTGATGTTGTTGAATTGGAAAAAGCTTTGCCACTTGATGATGATAAAAATTGTGATGCTTCTGATGATTCCTGTGTTAGTTTAGAGTGGTTTTTAGGTAGTAAGAATAGAATTTTTTTAGCTTCTGAGCGCCCGTCTAAGAAAAGGAAGCTTTTAGGTGGTGATGCTGGGTTGGAGAAAGTTGTAATGACTAGTCCTTCGGAAGGGGACCAACCTTATTGTCATTATTGTGGCAGTGGAGATTCTGGCACTGATTCCAATCGGTTAATAGTCTGCTCTTCTTGTAAAGTCGCAGTTCATCGGAAGTGCTATGGTATACATGACAATGTAGACGAGTCTTGGTTGTGTTCTTGGTGTAAGCAAAAGGGTGATGTTGATGACTCGGTGAGTCCTTGTGTTCTTTGCTCAAAGAAGGGTGGTGCTTTAAAACCAATTAATAGTGTTAATGAAGATGTTGGGTCTTCCCAGTTTGTGCACCTGTTTTGTGGTCTGTGGATGCCGGAGGTTTATATTGATGATTTGAAGAAGATGGAGCCTGTTATGAATGTGGGAGACATCAAGGAAACTAGAAGAAAATTGGTGTGTAATGTTTGCAAATTGAAATGTGGTGCATGTGTTCGGTGTACTCGTGGATCCTGCAGAACTCCTTTTCATCCTTTATGTGCAAGGGAAGCTAAACATAGAATGGAAGTTTGGGCAAAGTACGGTATTGATGATATTGAACTGCGGGCTTTTTGCTCGAAACACTCTGATCTACAAGAGAACAGAAACATCATGCCATTAGGAGGCTCTATTGCAGTTGGCAGTGAAATTCCAGAAGCTAATGACCTTCCAGTGACTTTGCCAGTGAAAAGTGAACACAATTTAAAAATTGGTTGCAGCAATGGAGGGTTGGAGTCTGATAGTAATCCAGACAAGTTGAACCATAATGATGAAACTCCTAACGGAGGATTATCTGTCTGTATGATTAGTGCTCAAGCTCAAAATATGTTGGGATGTGGCGCTGCGCCACCACATAATATTGGGGTGGCAGGGAGAACCAATGAGAATGTTAATGCCTCTGAATCCCCCAGTTTTGTACTTGTTTTGAGAAAGTTGATAGATAAAGGGAAAGTTGATGTAAGAGATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAGCTGCAAATATCAATGAAGCTTATATGGCCCCTGACGTGCAACACAAAATATTCAATTGGCTAAAAGCCCATGTGTATACCGGTGCATCTCATAAAAGCTTAAAAGCCAAATTCAAACCGGCCAATGTATCTATAAATGAAACTGGCGCTTCAGACGGTTCTGATACTTCACCGTTATCTGATTCAGGCTTGCTGGATCCTGTTGCTGTTAATGTTAAGTCTGTACCACCAAGGAGACGAACTATCAATAACATTAGGATTTTGAAGGATAATAAAGTTATATGTTCATCTGAGGGGGTTACCACTAGTGAGAATGGGGTGTCAATTGATAAGTTCCTAGTTTGTCAGCCTGAGTGTGAAAGTCTAGGACGTTCTGACAAAACATCAATTCCTGATGCCACTGAAACGAATTTAACCAAGTCTGAGGATATATTTCATGAGGTTCAAGGCAATGCTGATGAGCCCTACAAATCCAGCTTATCTGTATGCGTTTCAGAACAGAAGTCTGCTGCTTGCTTGCCGAATGCTTCTATGCTTTCAGATCAGCACTATCCAGCTCATTCTGCTTCAGAACCACCCGTTCCTGGTTTCATAAAAATGGAAGCAATCTCTAGTTACATTCACCCTTACATTAACAAGAAATTGCTGCAGATTCGTGATGGCTTGCCCTCAGGGGATCTTATGGCAGGTTTAAGTGGCTACAGAAATTCTTTTATTGAACCCTTTGGAGCTAATAGCTGCTCAAGTAGTGAAAACCAGCAATTAATTTGCACCGACGTTTCCAAGGCTGATCAAGTAAAGGCAGAGCAGTTGGATAGGGATGAGTTGGAGGGGGAGCTTATATATTTTCAGAATAGACTGCTGCAGAAAGCAGTTGCAAAAAACAGGCTTACTGAAAAATTAGTCTACAATGTTGCCAAGATTTTGCCTCAGGAGATTGATAAAACACATCAACAAAGATGGGATGCTGTGATTGCTAATCAATATCTGTGTGATCTTAGGGAGGCAAAGAAACAAGGTAGAAAAGAAAAAAAGCACAAGGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCAGCAGCAGCATCATCTTCTAGGGTTTCTTCTTTACGTAAAGATACCATAGATGAATCTTTACAACAGAATTCATTAAAGTTGGATGCTTTAAGTGGGCGGACTGGTATATGTTCTCAGCCAATGCCACGTGCCAAAGAGACTCTTTCTAGAGTTGCTGTCACTAGAGCTTCAACAGAGAATTTTTCTCTGCCAAGCTCAGATTTTTCTAAGGGGCAACGTAAATCATGTGATATCTGCAGACGCTTTGAGAATATGTTAAATCCTATCCTAGTGTGCTCTGGTTGCAAGGTTGCAGTGCACTCAGTTTGCTATCGCAGTGTGAAGGAAACAACAGGTCCATGGTACTGTGAATTATGTGAAGATCTATTGTCAAGAAGTTCTGGTACATCTGATATAAATAGCTGGGAGAAGCCTTATTTTGTTGCAGAATGTGCTCTCTGTGGTGGTACTACCGGTGCTTTTAGGAAGTCATCTGATGGTCAATGGGTTCATGCCTTTTGTACCGAGTGGCTTTTTGAGTCTACATTCAAAAGAGGACAGACAGATGTTATTGAAGGAATGGAGACTGTGCCAAAAGGAGTTGATATTTGTTGCATCTGCCACCGCAAGCATGGTGTATGCATGAAGTGTTGCTATGGCCATTGCCTGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTTCATGATTGTGAGGACTGCTGCCGGGGGAAAGATGCAACACAAGGCTTACTGTGAAAAGCATAGTTCGGAGCAGAGAGCAAAGGCTGAAAATCAAAAGCATGGAGTTGAAGAGTTAAAAAGTATCAAGCAAATTAGGGTTGAACTTGAGAGATTACGCCTCCTTTGTGAAAGAATTGTCAAACGGGAAAAGATAAAGCGGGAATTGGTTCTATGCTCACACGACATACTAGCCTTTAAAAGAGATCATGTTGCTAGGTCTGTGCTTGTTCATAGTCCTTTCGTCCTTCCAGATGGTAGCTCAGAATCAGCTACAACATCCCTTAAAGCGACCACAGAGGGGTACAGATCGTGCAGTGAAGCTCTCCAAAGATCAGATGACGTAACTGTGGATAGCTCAGTTTCTGCTAAGCACCGTGTCAGAGTTGCCGTATCCATGGACACAGACCCAAAGTTGGATGATGACTGCTCAACCTCACAAAGTCACTATAACCACAAGATTCCAGAGAAAAAGCAATTTTCTGGCAAACAGATTCCTCGTAGAGCTTCTGCTACATCACGCAATATCTCTGAGGAGGACGGATGGAGATCCAAATCTCGAAAGTTACAGGCTACTGAAACATTTGGAAAAGAGCTTGTTATGACATCAGATGAAGCATCTATGAAGAATTCAAGGCTACCTAAAGGATATGCATATGTTCCCGCGGATTGCCTGTCAAATGACAAACAGTCTAATGAGGATGTATATGCTAGTGGACCAGGGGAACATGACAGGTAG 4341 0.4241 MLSLLCTLLLPPMTGERCYRRKNTTEEDYPAVIEEMPSPADIPAEIPAVLEIDYFSQARKALSERCPFDVAEETSTSAAVTLPSGLASLLNRHGDNRKRHKKSHSGGGDKKKKKSSRASEKLRSFNVWVETEEYFRDLNLSDIDTLLEAYSSYSLASRECFTIPQFGNATGFNVVSSEDEKKHSPIFNVVNSENEKNAVEEVNNENGSLGIELSDVVELEKALPLDDDKNCDASDDSCVSLEWFLGSKNRIFLASERPSKKRKLLGGDAGLEKVVMTSPSEGDQPYCHYCGSGDSGTDSNRLIVCSSCKVAVHRKCYGIHDNVDESWLCSWCKQKGDVDDSVSPCVLCSKKGGALKPINSVNEDVGSSQFVHLFCGLWMPEVYIDDLKKMEPVMNVGDIKETRRKLVCNVCKLKCGACVRCTRGSCRTPFHPLCAREAKHRMEVWAKYGIDDIELRAFCSKHSDLQENRNIMPLGGSIAVGSEIPEANDLPVTLPVKSEHNLKIGCSNGGLESDSNPDKLNHNDETPNGGLSVCMISAQAQNMLGCGAAPPHNIGVAGRTNENVNASESPSFVLVLRKLIDKGKVDVRDVALEIGISPDTLAANINEAYMAPDVQHKIFNWLKAHVYTGASHKSLKAKFKPANVSINETGASDGSDTSPLSDSGLLDPVAVNVKSVPPRRRTINNIRILKDNKVICSSEGVTTSENGVSIDKFLVCQPECESLGRSDKTSIPDATETNLTKSEDIFHEVQGNADEPYKSSLSVCVSEQKSAACLPNASMLSDQHYPAHSASEPPVPGFIKMEAISSYIHPYINKKLLQIRDGLPSGDLMAGLSGYRNSFIEPFGANSCSSSENQQLICTDVSKADQVKAEQLDRDELEGELIYFQNRLLQKAVAKNRLTEKLVYNVAKILPQEIDKTHQQRWDAVIANQYLCDLREAKKQGRKEKKHKEAQAVLAAATAAAASSSRVSSLRKDTIDESLQQNSLKLDALSGRTGICSQPMPRAKETLSRVAVTRASTENFSLPSSDFSKGQRKSCDICRRFENMLNPILVCSGCKVAVHSVCYRSVKETTGPWYCELCEDLLSRSSGTSDINSWEKPYFVAECALCGGTTGAFRKSSDGQWVHAFCTEWLFESTFKRGQTDVIEGMETVPKGVDICCICHRKHGVCMKCCYGHCLTTFHPSCARSAGLFMIVRTAAGGKMQHKAYCEKHSSEQRAKAENQKHGVEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVHSPFVLPDGSSESATTSLKATTEGYRSCSEALQRSDDVTVDSSVSAKHRVRVAVSMDTDPKLDDDCSTSQSHYNHKIPEKKQFSGKQIPRRASATSRNISEEDGWRSKSRKLQATETFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNDKQSNEDVYASGPGEHDR 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02253 1446 CDD ePHD 1103 1209 - -
Trre5g02253 1446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 338 IPR013083 -
Trre5g02253 1446 MobiDBLite consensus disorder prediction 1334 1364 - -
Trre5g02253 1446 MobiDBLite consensus disorder prediction 94 111 - -
Trre5g02253 1446 ProSiteProfiles Zinc finger PHD-type profile. 1032 1081 IPR019787 -
Trre5g02253 1446 Coils Coil 1230 1250 - -
Trre5g02253 1446 SUPERFAMILY FYVE/PHD zinc finger 277 334 IPR011011 -
Trre5g02253 1446 ProSitePatterns Zinc finger PHD-type signature. 287 332 IPR019786 -
Trre5g02253 1446 ProSiteProfiles Extended PHD (ePHD) domain profile. 342 463 IPR034732 -
Trre5g02253 1446 ProSiteProfiles Zinc finger PHD-type profile. 284 335 IPR019787 -
Trre5g02253 1446 PANTHER PHD FINGER PROTEINS 97 974 - -
Trre5g02253 1446 ProSitePatterns Zinc finger PHD-type signature. 1035 1078 IPR019786 -
Trre5g02253 1446 ProSiteProfiles Extended PHD (ePHD) domain profile. 1100 1210 IPR034732 -
Trre5g02253 1446 MobiDBLite consensus disorder prediction 91 118 - -
Trre5g02253 1446 SUPERFAMILY FYVE/PHD zinc finger 1027 1079 IPR011011 -
Trre5g02253 1446 Pfam PHD-zinc-finger like domain 1102 1209 - -
Trre5g02253 1446 Pfam PHD-zinc-finger like domain 344 462 - -
Trre5g02253 1446 SMART PHD_3 1034 1079 IPR001965 -
Trre5g02253 1446 SMART PHD_3 1155 1210 IPR001965 -
Trre5g02253 1446 SMART PHD_3 407 463 IPR001965 -
Trre5g02253 1446 SMART PHD_3 286 333 IPR001965 -
Trre5g02253 1446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1100 1212 IPR013083 -
Trre5g02253 1446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 465 IPR013083 -
Trre5g02253 1446 Pfam PHD-finger 300 333 - -
Trre5g02253 1446 Pfam PHD-finger 1046 1079 - -
Trre5g02253 1446 MobiDBLite consensus disorder prediction 1334 1390 - -
Trre5g02253 1446 MobiDBLite consensus disorder prediction 1423 1446 - -
Trre5g02253 1446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1013 1086 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02253 Trre-Chr5 17050522 17060554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02253 287 470 C2H2 Transcription Factor Family AT3G14740 28.877 1.47e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre5g02253 zf-HC5HC2H_2 6.6e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02253 - - tpra:123896915 2603.16