Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02248 ATGGATTCTAAGAAGCTTCGAAGAAAACCGAAACTCGAGCGTCGTAATGCTCACAAGTACTTCGATTACGACGCTGGATCGTCTTCTTCTTCTTCGTTTGATGATTCTTCTGGTTCACTCTATACTCGTTCTATGGAGTTGTATGATCGTACTAGCTTCCGTATTGAAGGAATTGAAGGTGAGCTCGATCGAATTTGTCAGAGTTTAGGACTATCTGGACCTGAAGATTTTGCGATTCCTGCTGCTGCTTGGGAAGCTATGAAGTTTCGATCGTCTTCGGATATTCTTCCCAGTTTGAAGATTGAGGATATTGATCTTCAGCAGCAGAATGAGGAAGAAGATAAATTGAGTGAGAAATGTGAAGATAGGAATAGGAATAGGGATAGGGATAGTGTTAGGGTTACAGATGAGGTTGCTGAGACTGTTGTTGTTGTTGGTAGTGGTGGTTGTGGTGGCGGTATTAATGGAATTCGTCCACCTATGATTAAACCGCCACCGGGGATGAGAGTTCGTGTTGTTGATAACACGTGTTCAACTTGGGACCTTTTGAAGGAATTGGCTCCGGTAGTGGAAGGGGAAGAAGGGGTTATCAACAGGGAAATGGCGGAGAAAGAAAGTGAGGAACTTGATAGGGTAAGTCCCAAGAGAGAGGAGGAAGATGTGGTGGTGGATAATGTGGCAATTATTGATGTTCTTTCGGATTTTAGTACTTCGAATGAAGATGATTCTTCTAGCTCTGCCACGGAACCTAGGTCTAATAATGTATCTCCTAACGGGAGAATTAAGCGGATTATTACCCCTGGATGCTGGCAGAAGGGCGAGTTTTTGGGGGGTGGTTCGTTTGGTTCTGTTTATGAAGGAATTTCTGACGATGGAATCTTTTTTGCTGTAAAAGAAGTTTCACTGCTAGATCAAGGGGATCAGGGAAAACAAAGTGTCTATCAACTGGAGCAGGAAATTGCACTTTTGAGTCGTTTTGAACATGACAATATAGTTCAATACTATGGCACTGAAATGGATGAATCCAAGCTGTATATCTTTATTGAGCTTGTGACCAAAGGTTCTCTTCGAAACCTCTATCAGAGGTATACTCTCCGAGATTCCCAAGTATCTGCTTATACGAGACAAATTCTGCATGGTTTGAAGTATCTTCATGATCAAAATGTTGTTCACAGGGACATCAAATGTGCAAATATATTGGTGCACGCAAGTGGATCTGTCAAACTTGCAGATTTTGGTTTAGCAAAGGCAACCAAATTGAATGACGTTAAGTCATGCAAGGGGACAGCATTCTGGATGGCGCCTGAGGTTGTGAAAGGAAAAAACAAAGGTTACGGGCTTCCAGCTGATGTTTGGAGTCTGGGATGCACTGTGCTGGAGATGCTAACGGGCGAAATTCCATACTCCAATTTAGAATGTATGCAAGCAATATTTAGAATTGGAAAAGGCGAGCCACCTCCTATTCCTGACACTCTTTCAAGAGATGCAAAGGATTTTATCTTGCAGTGCCTTCAAGTTAATCCTGATGATCGTCCTACTGCTGCTCAACTCTTAAACCATCCATTTCTCCATAGGCCACTTTCCCAGTCTTCATCTCCTTACATTCATGGTAGAAGGGGTTAA 1623 0.4264 MDSKKLRRKPKLERRNAHKYFDYDAGSSSSSSFDDSSGSLYTRSMELYDRTSFRIEGIEGELDRICQSLGLSGPEDFAIPAAAWEAMKFRSSSDILPSLKIEDIDLQQQNEEEDKLSEKCEDRNRNRDRDSVRVTDEVAETVVVVGSGGCGGGINGIRPPMIKPPPGMRVRVVDNTCSTWDLLKELAPVVEGEEGVINREMAEKESEELDRVSPKREEEDVVVDNVAIIDVLSDFSTSNEDDSSSSATEPRSNNVSPNGRIKRIITPGCWQKGEFLGGGSFGSVYEGISDDGIFFAVKEVSLLDQGDQGKQSVYQLEQEIALLSRFEHDNIVQYYGTEMDESKLYIFIELVTKGSLRNLYQRYTLRDSQVSAYTRQILHGLKYLHDQNVVHRDIKCANILVHASGSVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVKGKNKGYGLPADVWSLGCTVLEMLTGEIPYSNLECMQAIFRIGKGEPPPIPDTLSRDAKDFILQCLQVNPDDRPTAAQLLNHPFLHRPLSQSSSPYIHGRRG 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02248 540 Pfam Protein kinase domain 271 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02248 540 Coils Coil 106 126 - -
Trre5g02248 540 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 130 532 - -
Trre5g02248 540 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524
Trre5g02248 540 SUPERFAMILY Protein kinase-like (PK-like) 254 528 IPR011009 -
Trre5g02248 540 MobiDBLite consensus disorder prediction 236 260 - -
Trre5g02248 540 MobiDBLite consensus disorder prediction 110 130 - -
Trre5g02248 540 SMART serkin_6 270 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02248 540 MobiDBLite consensus disorder prediction 109 130 - -
Trre5g02248 540 Gene3D Transferase(Phosphotransferase) domain 1 269 536 - -
Trre5g02248 540 ProSiteProfiles Protein kinase domain profile. 270 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02248 540 FunFam Mitogen-activated protein kinase 1, putative, expressed 268 535 - -
Trre5g02248 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02248 Trre-Chr5 17006158 17014163 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02248 11 527 MAP Kinase Kinase Kinase AT4G08500 50.524 2.33e-167 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre5g02248 Pkinase 2.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02248 K13414 - gmx:100819999 749.199