Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02247 ATGGATTCTAAGAAACTTCGAAGAAAACCGACACTCGAGCGTCTTAATGCTCTCAATGACTTCGATTACGACGCTGGATCGTCTTCTTCTTCGTTTGGTGATTCTTCTGGTTCACTGTATACTCGTTACATGGATGCTCGTACTCGTTACAAGGATGCTCGTAATAGCCGTATTGAAGGATTTGAAGGTGTTTGTCAGAGTTTAGGACTTTTTCCACGTCCTATTGCTGCTTGGAAAGCTCAGTTTCGATCGTCTTCGGATATTCTTCCTAGTTTGAAGAATGAGGAAGAAGATAAATTGAGTGAGAAATGTGAAGATAGGGATAGGGATAGGGATAGAGATAGTGTTAGGGTTACAGATGAGGTTGCTGAGACTGTTGTTGTTGGTAGTGGTGGCGGTATTAAAGGGGTTATCAACAGGGAAATGGCGGAGAAAGAAAATGAGGAAGTTCATAGGGTAAGTCCCAAGAGAGAGGATGAAGATGTGGTGGTGGATAATGCGGCAATGATTGATGAGATTGTTGATGGTCTTTCGGATTTTAGTATTTCGAATGAAGATGATTCTTCTAGCTCTGCCATGGAACCTAGGTCTAATAATGTATCTCCTAACGGGAGAATTAAGCGTGTTATTAGGATTACCTCTGGATGCTGGCGAAAGGGCAAGTTTTTGGGGGCTGGTTCGTTTGGTTCTGTTTATGAAGGAATTTATAAGGATGGATTCTTTTTTGCTGTAAAAGAAGTTTCACTGCTTGATCAAGGGGATCAGGGAAAACAAAGTGTCTATCAACTGGAGCAGGAAATTGCACTTTTGAGTCGTTTTAAACATGACAATATAGTAAAATACTATGGCACTGAAATGGATGAATCCAAGCTGTATATCTTTATTGAGTTTATGACCAAAGGTTCTCTTAGAAACCTCTATCAGACGTACACTCTCCAAGATTCCCAAGTATCTGCCTATACGAGACAAATTCTGCATGGTTTGAAGTATCTTCACGATCAAAATGTAGTTCACAGGGACATCAAATGTGCAAATATATTGGTGCACACTAATGGATCTGTCAAACTTGCAGATTTTGGGTTAGCAAAGGCAACCAAATTGAATGATGTTAAATCATGCAAGGGGACAGCATTGTGGATGGCACCTGAGGTTGTGAAAGGAAAAAACAACAAAGGTTACGGGCTTCCAGCTGATGTTTGGAGTCTGGGATGCACTGTGCTTGAGATGCTAACTCGCAAATTTCCATACTCCGATTTCGAATGGGTGGAGGCAATATTTAAAATTGGAAAAGAGGAGCCACCTCCTATTCCTGACACTCTTTCAAGAGATGCAAAGGATTTTATCTTGCAGTGCCTTCAAGTTAATCCTGATGATCGTCCTACTGCTGCTCAACTCTTAAACCATCCATTTCTCCATAGGCCACTTTCCCAGTCTTCATCTCCTTACATTCATGGTAGAAGGGGTTAA 1467 0.4117 MDSKKLRRKPTLERLNALNDFDYDAGSSSSSFGDSSGSLYTRYMDARTRYKDARNSRIEGFEGVCQSLGLFPRPIAAWKAQFRSSSDILPSLKNEEEDKLSEKCEDRDRDRDRDSVRVTDEVAETVVVGSGGGIKGVINREMAEKENEEVHRVSPKREDEDVVVDNAAMIDEIVDGLSDFSISNEDDSSSSAMEPRSNNVSPNGRIKRVIRITSGCWRKGKFLGAGSFGSVYEGIYKDGFFFAVKEVSLLDQGDQGKQSVYQLEQEIALLSRFKHDNIVKYYGTEMDESKLYIFIEFMTKGSLRNLYQTYTLQDSQVSAYTRQILHGLKYLHDQNVVHRDIKCANILVHTNGSVKLADFGLAKATKLNDVKSCKGTALWMAPEVVKGKNNKGYGLPADVWSLGCTVLEMLTRKFPYSDFEWVEAIFKIGKEEPPPIPDTLSRDAKDFILQCLQVNPDDRPTAAQLLNHPFLHRPLSQSSSPYIHGRRG 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02247 488 Gene3D Transferase(Phosphotransferase) domain 1 216 484 - -
Trre5g02247 488 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 107 480 - -
Trre5g02247 488 FunFam Mitogen-activated protein kinase 1, putative, expressed 215 483 - -
Trre5g02247 488 ProSiteProfiles Protein kinase domain profile. 217 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02247 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 336 348 IPR008271 GO:0004672|GO:0006468
Trre5g02247 488 MobiDBLite consensus disorder prediction 93 116 - -
Trre5g02247 488 PRINTS Tyrosine kinase catalytic domain signature 397 419 IPR001245 GO:0004672|GO:0006468
Trre5g02247 488 PRINTS Tyrosine kinase catalytic domain signature 295 308 IPR001245 GO:0004672|GO:0006468
Trre5g02247 488 PRINTS Tyrosine kinase catalytic domain signature 440 462 IPR001245 GO:0004672|GO:0006468
Trre5g02247 488 PRINTS Tyrosine kinase catalytic domain signature 330 348 IPR001245 GO:0004672|GO:0006468
Trre5g02247 488 Pfam Protein kinase domain 218 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02247 488 SUPERFAMILY Protein kinase-like (PK-like) 197 476 IPR011009 -
Trre5g02247 488 SMART serkin_6 217 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02247 488 ProSitePatterns Protein kinases ATP-binding region signature. 223 245 IPR017441 GO:0005524
Trre5g02247 488 MobiDBLite consensus disorder prediction 183 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02247 Trre-Chr5 16988812 16996976 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02247 183 475 MAP Kinase Kinase Kinase AT4G08500 63.636 2.57e-127 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre5g02247 Pkinase 1.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02247 K13414 - gmx:100819999 577.4