Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02246 ATGACTCACCAACTAAGCTTGATCTTGCTGGGAAATTTTTTGAAGGCAGTGCTTGATATACCTTTCACATTTAAAAGGGTTGAAGCAATGCTTTACATGGTCAATTTTCAATCTGAAGCTGCCTGTGAAGAACTGCGGAATTGTAGAATGTTCTTGAAGCTTCTAGAGGTTGTACTTAAAACTGGGAAGCGCATGAATGTGGGAACAAATCGTGGTCATGCAGAGGCCTTCAAGCTCGATACACTTCTAAAATTGGCTGATGTAAAAGGCGCAGATGGGAAAACCACTCTACTTCATTTTGTCGTACAGGAAATTATTAGAACTGAAGGCGCTCGTCTCTCTGGTACTAATCATATTACAAGCTCTACATTAACCGAAGATGTTAAGTGTGGGAGACTAGGCCTACAAGTTGTGTCTAATCTGAGTTCAGAGCTATCGAATGGAAAGAGGGCCGCTACTGTGGATTCCGAAGCTCTCAGCGGCAATGTCTTTAAACTTTCGAAATGA 507 0.4181 MTHQLSLILLGNFLKAVLDIPFTFKRVEAMLYMVNFQSEAACEELRNCRMFLKLLEVVLKTGKRMNVGTNRGHAEAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARLSGTNHITSSTLTEDVKCGRLGLQVVSNLSSELSNGKRAATVDSEALSGNVFKLSK 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02246 168 PANTHER FORMIN-RELATED 12 168 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trre5g02246 168 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1 168 IPR015425 -
Trre5g02246 168 Pfam Formin Homology 2 Domain 12 167 IPR015425 -
Trre5g02246 168 Gene3D Formin, FH2 domain 10 168 IPR042201 -
Trre5g02246 168 SUPERFAMILY Formin homology 2 domain (FH2 domain) 13 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02246 Trre-Chr5 16985860 16986503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02246 13 168 FH2 protein (formin) Gene Family AT3G25500 71.429 4.66e-70 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02246 - - gmx:100801837 239.965