Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02239 ATGGCGGCTTCAGTAGATAACCGCATCTGGACAAGGACAAGCCTTGAAAAAAGCACAGTTCATCATGCTTTCAGGTCAACCTCAGAAGTCAAACATTTCTATAAATCATCACCCCAACCTAAACCGCCATTACCATTCGATGAAGAAGATGAGATTGAAACTGAGAATTTCAACAACAACCTCATTATGAAATCAAAAGAAACCGCAAAAGAATTACAACCGTCGATCTTCGATCCACGCGATGAAGGAACATCAGATCAATGGATTCCACGGAACACTTCAATGGTCCGTCTCACAGGAAAACATCCTTTCAACTCAGAACCACCACTCCAACAACTAATGCAACACGGTTTCATTACACCCGTCCCACTTCACTATGTTCGCAACCACGGGCCTGTTCCAAAAGCCCAATGGGATAATTGGACCGTCGAAGTAACAGGCCTAGTCAAAAGCCCAACCCAATTCACAATGGCCCAACTAATCAACGATTTCCCAAGCCGCGAATTCCCCGTTACACTTGTTTGCGCTGGTAACCGTCGTAAGGAACAAAACATGATAAAACAGAGCATTGGTTTTAATTGGGGTGCTTCAGCGGTCTCCACTTCAGTGTGGCGCGGTATACCGTTACGTACTGTACTCAAGCGGTGTGGAATTTATAACCGTAAAAGTGGGGCCCTTTATGTTTGTTTTGAAGGCGCTGAAGAACTGCCAGGTGGCGGTGGGTCTAAATATGGAACTAGTATCATGAGGGAAGTTGCATTGGATCCTTCTCGCGATATTATTCTTGCATATATGCAAAACGGTGACGTTTTGTCACCTGATCATGGTTTTCCTGTGAGAATTATAATACCGGGTTTTATTGGAGGAAGAATGGTGAAATGGTTGAAACGTATTATTGTTACACCTCAACAATCTGATAGTTATTATCATTATAATGATAATAGAGTTCTTCCTTCTCATGTTGATGCTGAACTTGCCAATGCTGAAGCTTGGTGGTACAAGGCGGAGTATATTATCAATGAGCTGAATATAAACTCCGTGATAACGTCACCGTGCCATGATGAAATACTGCCAATCAATTCATACACTACTCAGATGCCTTACTTACTTAAAGGTTACGCATATTCTGGGGGTGGTAGAAAAGTGACACGTGTTGAAGTAACAATGGATGGTGGTGAAACGTGGCAGGTATGCACATTAGACCACTCAGAAAAGCCAAACAAATATGGTAAGTATTGGTGTTGGTGCTTTTGGTTCTTAGAAGTGGAAGTGTTGGACCTTCTTGGAGCCAATGAAATAGCTGTTCGAGCTTGGGATGAGTCCCTCAACACCCAACCTCAGAAACTAAATTGGAATCTCATGGGTATGATGAATAATTGTTGGTTCAAAGTAAAATCTAATTTATGCAAAGCTCACAAGGGTGAAATCGGGATATTATTCGAGCACCCAACCCAACCAGGGAACCAATCAGGTGGTTGGATGGCAAAAGAAAAACAATTGGAGAAATCATCAGAGTCTAATTCAATCCTCAAGAAGAGTCTCTCATCACCTTTCATGATCACTAGCTCAAAAACCTACACAATCTCTGAAGTAAAAAAACACAATAATGCTGATTCGACATGGATCATCGTCCACGGCCACGTCTATGACTGCACACGCTTCATCAAAGATCACCCTGGTGGCGCAGACAGCATCCTCATCAACGCTGGCACTGATTGTACAGAGGAGTTTGAAGCCATCCATTCGGGCAAAGCTAAGAAAATGATCGAGGAGTTTCGAATAGGTGAACTCATAACCACAGGTAGTCACAACACCAATTTATCGCCAAATAACTCAATGCACAACATTTCTGTTCCCTCTAATTTGGCCCCCATTAAGGAAATTACACATACACCCCTACTCAGCAATGTAGCTCTAAACTCGCGCGAGAAAATCCCTTGCAAGCTTCTCTTGAAAAAGACAATCTCTCACGATGTCAGGCTCTTCCGTTTTGCATTATCAAATGAGACACAACTCTTGGGATTGCCTGTGGGGAAGCACATATTCTTATGTGCAACTATCAATGAGAAGTTGTGCATGCGAGCTTACACACCAACAAGTGGTGTAGATGAAGTTGGATATTTCGATCTAATTGTAAAGATTTACTTAAAAGGAGTGCACCCAAAATTCCCTAATGGTGGCCTAATGTCTCAATATTTGGTCTCTTTGTCCATTGGCTCTGTTTTAGATATAAAGGGTCCATTGGGACATATTGAGTATACTGGTAAAGGAAATTTTCTTGTTCATGGAGAACACAAGTTTGCAAAGAGGTTAGCTATGTTGGCTGGTGGAACTGGGATAACACCAATTTACCAAGTGGTTCAAGCGATTCTGAAAGATCCAGAAGATCTAACTGAAATGCATGTTGTGTATGCTAATAGAAGTGAGGATGATATATTGTTGAGGGAAGAGATGAATGAATGGGCTAAGAAGCATGAAAGGTTCAAGATATGGTATGTAGTACAAGAAAGTAAAAGAGAAGGGTGGGAGTATAGTGTGGGATTCATTAATGAAAGTATTTTGAAGCAACATGTTCCACCGGCTTCTCAAGATACATTAGCGTTGGTATGTGGGCCACCACCCATGATTCAGTTTGCAGTAAAGCCCAATTTAGAGAAGTTGGGCTATGATGTTACCAACAATCTACTCCTCTTTTAA 2697 0.4182 MAASVDNRIWTRTSLEKSTVHHAFRSTSEVKHFYKSSPQPKPPLPFDEEDEIETENFNNNLIMKSKETAKELQPSIFDPRDEGTSDQWIPRNTSMVRLTGKHPFNSEPPLQQLMQHGFITPVPLHYVRNHGPVPKAQWDNWTVEVTGLVKSPTQFTMAQLINDFPSREFPVTLVCAGNRRKEQNMIKQSIGFNWGASAVSTSVWRGIPLRTVLKRCGIYNRKSGALYVCFEGAEELPGGGGSKYGTSIMREVALDPSRDIILAYMQNGDVLSPDHGFPVRIIIPGFIGGRMVKWLKRIIVTPQQSDSYYHYNDNRVLPSHVDAELANAEAWWYKAEYIINELNINSVITSPCHDEILPINSYTTQMPYLLKGYAYSGGGRKVTRVEVTMDGGETWQVCTLDHSEKPNKYGKYWCWCFWFLEVEVLDLLGANEIAVRAWDESLNTQPQKLNWNLMGMMNNCWFKVKSNLCKAHKGEIGILFEHPTQPGNQSGGWMAKEKQLEKSSESNSILKKSLSSPFMITSSKTYTISEVKKHNNADSTWIIVHGHVYDCTRFIKDHPGGADSILINAGTDCTEEFEAIHSGKAKKMIEEFRIGELITTGSHNTNLSPNNSMHNISVPSNLAPIKEITHTPLLSNVALNSREKIPCKLLLKKTISHDVRLFRFALSNETQLLGLPVGKHIFLCATINEKLCMRAYTPTSGVDEVGYFDLIVKIYLKGVHPKFPNGGLMSQYLVSLSIGSVLDIKGPLGHIEYTGKGNFLVHGEHKFAKRLAMLAGGTGITPIYQVVQAILKDPEDLTEMHVVYANRSEDDILLREEMNEWAKKHERFKIWYVVQESKREGWEYSVGFINESILKQHVPPASQDTLALVCGPPPMIQFAVKPNLEKLGYDVTNNLLLF 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02239 898 PANTHER SULFITE REDUCTASE 28 471 - -
Trre5g02239 898 Gene3D - 749 898 IPR039261 -
Trre5g02239 898 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 520 600 IPR036400 -
Trre5g02239 898 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 78 339 IPR036374 -
Trre5g02239 898 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 554 561 IPR018506 GO:0020037
Trre5g02239 898 FunFam Sulfite oxidase, mitochondrial 521 602 - -
Trre5g02239 898 Pfam Oxidoreductase NAD-binding domain 773 880 IPR001433 GO:0016491
Trre5g02239 898 Gene3D - 520 599 IPR036400 -
Trre5g02239 898 FunFam NADH-cytochrome b5 reductase 634 748 - -
Trre5g02239 898 PRINTS Cytochrome B5 reductase signature 772 791 - -
Trre5g02239 898 PRINTS Cytochrome B5 reductase signature 810 821 - -
Trre5g02239 898 PRINTS Cytochrome B5 reductase signature 866 874 - -
Trre5g02239 898 PRINTS Cytochrome B5 reductase signature 673 684 - -
Trre5g02239 898 PRINTS Cytochrome B5 reductase signature 739 753 - -
Trre5g02239 898 PRINTS Cytochrome B5 reductase signature 694 701 - -
Trre5g02239 898 SMART Cyt_b5_2 526 598 IPR001199 -
Trre5g02239 898 Pfam Mo-co oxidoreductase dimerisation domain 337 465 IPR005066 GO:0016491|GO:0030151
Trre5g02239 898 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 642 754 IPR017927 GO:0016491
Trre5g02239 898 Gene3D - 341 516 - -
Trre5g02239 898 PRINTS Cytochrome B5 signature 573 580 IPR001199 -
Trre5g02239 898 PRINTS Cytochrome B5 signature 548 558 IPR001199 -
Trre5g02239 898 PRINTS Cytochrome B5 signature 585 597 IPR001199 -
Trre5g02239 898 PRINTS Cytochrome B5 signature 558 572 IPR001199 -
Trre5g02239 898 CDD eukary_NR_Moco 81 465 - -
Trre5g02239 898 PRINTS Eukaryotic molybdopterin domain signature 384 396 IPR008335 GO:0016491
Trre5g02239 898 PRINTS Eukaryotic molybdopterin domain signature 171 182 IPR008335 GO:0016491
Trre5g02239 898 PRINTS Eukaryotic molybdopterin domain signature 118 134 IPR008335 GO:0016491
Trre5g02239 898 PRINTS Eukaryotic molybdopterin domain signature 96 110 IPR008335 GO:0016491
Trre5g02239 898 PRINTS Eukaryotic molybdopterin domain signature 436 448 IPR008335 GO:0016491
Trre5g02239 898 PRINTS Eukaryotic molybdopterin domain signature 197 212 IPR008335 GO:0016491
Trre5g02239 898 PRINTS Eukaryotic molybdopterin domain signature 370 384 IPR008335 GO:0016491
Trre5g02239 898 PRINTS Eukaryotic molybdopterin domain signature 411 421 IPR008335 GO:0016491
Trre5g02239 898 PRINTS Eukaryotic molybdopterin domain signature 182 194 IPR008335 GO:0016491
Trre5g02239 898 PRINTS Eukaryotic molybdopterin domain signature 255 271 IPR008335 GO:0016491
Trre5g02239 898 PRINTS Eukaryotic molybdopterin domain signature 449 462 IPR008335 GO:0016491
Trre5g02239 898 PRINTS Eukaryotic molybdopterin domain signature 288 301 IPR008335 GO:0016491
Trre5g02239 898 PRINTS Eukaryotic molybdopterin domain signature 272 285 IPR008335 GO:0016491
Trre5g02239 898 PRINTS Eukaryotic molybdopterin domain signature 339 351 IPR008335 GO:0016491
Trre5g02239 898 SUPERFAMILY E set domains 341 465 IPR014756 -
Trre5g02239 898 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 557 567 IPR001709 GO:0016491
Trre5g02239 898 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 694 701 IPR001709 GO:0016491
Trre5g02239 898 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 866 874 IPR001709 GO:0016491
Trre5g02239 898 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 810 821 IPR001709 GO:0016491
Trre5g02239 898 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 798 807 IPR001709 GO:0016491
Trre5g02239 898 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 842 858 IPR001709 GO:0016491
Trre5g02239 898 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 772 791 IPR001709 GO:0016491
Trre5g02239 898 Gene3D - 80 331 IPR036374 -
Trre5g02239 898 CDD cyt_b5_reduct_like 647 890 - -
Trre5g02239 898 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 741 892 IPR039261 -
Trre5g02239 898 FunFam Nitrate reductase 341 517 - -
Trre5g02239 898 Gene3D Translation factors 634 748 - -
Trre5g02239 898 PIRSF Nitr_rd_NADH 9 897 IPR012137 GO:0006809|GO:0042128|GO:0050464
Trre5g02239 898 FunFam Nitrate reductase 82 331 - -
Trre5g02239 898 Pfam Cytochrome b5-like Heme/Steroid binding domain 528 597 IPR001199 -
Trre5g02239 898 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 523 598 IPR001199 -
Trre5g02239 898 FunFam Nitrate reductase [NADH] 749 898 - -
Trre5g02239 898 Pfam Oxidoreductase FAD-binding domain 647 753 IPR008333 -
Trre5g02239 898 SUPERFAMILY Riboflavin synthase domain-like 637 755 IPR017938 -
Trre5g02239 898 Pfam Oxidoreductase molybdopterin binding domain 130 309 IPR000572 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02239 Trre-Chr5 16931837 16936211 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02239 648 889 NADPH P450 reductases AT5G17770 38.934 1.30e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02239 K10534 - gmx:732634 1445.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02239 5 16931837 16936211 Trre5g02239 5 16931837 16936211 ECH