Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02236 ATGTCTACTTCTGTTGAAAATCGTCGAACCTACTACACTACCCTTGAATACGACGTTGTTGAACCCTTAAAGTCAATTAGCTCAAAAACCTCTTTTATATCGGATTCTTCGAACAAAGAAGATGATGAGAATTACTTGAACATGGTCAAAAACATAATCTTAAAAGGAAGATCCGAAGTAGAACCTTCGGTATTAGACCCTCGTGATGAGGGAACCGCGGATCACTGGATCGAAAGAAACCCTTCCTTGATCCGTCTCACGGGCAAACACCCTTTTAACTCAGAGCCACCACTCCAAAGTCTCATGCACCATGGCTTCATAACTCCCGTTCAACTCCATTATGTTCGTAATCACGGGCATGTTCCCAAAGCCCGTTGGGAAGATTGGACCATCGAAGTAACAGGTCTGGTAAAAAACCCGACCCAGTTCTCGATGGACCAACTTGTCAATGACTTTCCAACTCGTGAATTCCCTGTCACGCTCGTTTGTTCTGCAAATCGTCGTAAGGAACAAAATATGGTGAAACAGACTATTGGCTTTAACTGGGGCCCATGTGCCACTTCCACTTCGGTGTGGCGCGGTGTACCGTTGCGCAACATGCTCAAAAGGTGTGGAATCTATAGCCGTAATAGTGGAGCTCTCTATGTTTGCTTTGAAGGTGCTGAGGAACTACCGGGTGGTGGTGGGAGTAAGTACGGAACTAGTATCTTGTGTGAGGTTGCATTAGATCGCACACGTGATATCATCCTCGCGTATATGCAAAACGGTGATGTTTTATCTCCTGATCACGGTTTTCCAGTGCGAGTTATCGTGCCTGGTTTCACTGCAGGGAGAATGGTGAAATGGTTGAAGCGCATCATCGTAACAACCAAAGAATCTGATAGCCATTACCATTACCACGATAACAGATTACTTCCTTCGCACGTTGATGCCGAGCTTGCAAATACAGAAGCGTGGTTCTACAAGCCGGAACATATTATCAACGAGTTGAACATAAACTCTGCGATAACCACGCCGAGCCATGGCGAGATATTGTCCGTCAACTCAGACACTACTCAAATACCTTATTTACTCAAAGGCTACGCATATTCTGGGGGTGGGAGAAAGGTGACAAGAGTTGAGGTTACGGTGGATGGTGGTGAAACATGGAAAGTATGCAAATTGGAGCATCCAGAGAAACCAAACAAATACGGTAAATATTGGTGTTGGTGTTTTTGGTCATTGGAGGTTGAAGTGTTAGACTTATTTGGAGCTAAAGAGATTGCAGTGCGTGCATGGGACCTGGCTAATAACACCCAGCCTGAGAATCTCAATTGGAATCTTATGGGCATGATGAATAACTGTTGGTTCAGAGTGAAAACAAATTTGTACAAGCCTCACAAGAGAGAGATTGGCATAATGTTTGAACATCCAACGCAACCAGGAAATCAATCTGGTGGTTGGATGGTCAAAGAAAAAGAAGAAATTAAAAAATCACCAGTTTCAGACTCAACCAATATTGTCTCCTCATCGCTACAAATAAACACTACTAGCTCAAAAATTTACACCATATCTGAGGTGAAAAAACATAATAACTCTGATTCTGCTTGGATCATCGTTGACGGTCATGTTTACGATTGCACTCACTACCTCAAAGACCACCCTGGAGGTGTTGATAGTATCCTCATCAACGCCGGCACTGATTGTACCGAGGAGTTTGAAGCCATCCACTCTGATAAAGCAAAGAAAATGCTTGAAGATTACTTGATTGGTAAGATTGATGTAACCACAGACACCAATGGCAATAATGTTGAAATCAATAACAAAGCTATTATCACACAAATGCATAACAATGTGGCTTTAAATAACCAACGTGAGAAAATTCCTTGTAAGCTTGTGTCAAAAAAGTCCATCTCCCACAATGTTAGGATTTTTCGATTTGTGTTACCTTATGAAGATCAACTCTTGGGTTTGCCGGTTGGGAAACACTTATTTTTATGTGACACTATTGAAAATAAGCTATGCATGCGAGCTTTCACTCCAATTAGCAGTGTAGATGAAAAGGGTTATTTTGATCTAGTGGTTAAGATTTATTTCAAAGGGGTGCACCCAAAATACCCCAATGGTGGCCTAATGTCTCAACATTTAGACTCATTGTCAATTGGTTCTGTTTTGGATATAAAGGGTCCATTGGGACATATTGAGTATATTGGTAAAGGAAGCTTTCTTGTTCATGGAGAATACAAGTTTGCAAAGAGGTTAGCTATGTTGGCCGGTGGAACTGGGATAACACCAATTTATCAAGTGGTTCAAGCGATTCTGAAAGACCCAGAAGATCTAACTGAAATGCATGTTGTGTATGCTAATAGAAGTGAGGATGATATATTGTTGAGGAAAGAGATGGATGAATGGGCTAAGAAGCATGAAAGGTTCAAGGTATGGTATGTGGTACAAGAAAGTAAAAGAGAAGGGTGGGAGTATAGTGTGGGGTTCATTAGTGAAAGTATTTTGAAGAACCATGTTCCAAAAGCATCAGAGGATACACTGGCATTGGCATTGGCATGTGGACCACCACCCATGATTGAAGGGGTGAAATCCAATTTGGAGAAATTGGGATATGACATCAAGAACAACTTGCTTGTGTTTTAG 2628 0.4182 MSTSVENRRTYYTTLEYDVVEPLKSISSKTSFISDSSNKEDDENYLNMVKNIILKGRSEVEPSVLDPRDEGTADHWIERNPSLIRLTGKHPFNSEPPLQSLMHHGFITPVQLHYVRNHGHVPKARWEDWTIEVTGLVKNPTQFSMDQLVNDFPTREFPVTLVCSANRRKEQNMVKQTIGFNWGPCATSTSVWRGVPLRNMLKRCGIYSRNSGALYVCFEGAEELPGGGGSKYGTSILCEVALDRTRDIILAYMQNGDVLSPDHGFPVRVIVPGFTAGRMVKWLKRIIVTTKESDSHYHYHDNRLLPSHVDAELANTEAWFYKPEHIINELNINSAITTPSHGEILSVNSDTTQIPYLLKGYAYSGGGRKVTRVEVTVDGGETWKVCKLEHPEKPNKYGKYWCWCFWSLEVEVLDLFGAKEIAVRAWDLANNTQPENLNWNLMGMMNNCWFRVKTNLYKPHKREIGIMFEHPTQPGNQSGGWMVKEKEEIKKSPVSDSTNIVSSSLQINTTSSKIYTISEVKKHNNSDSAWIIVDGHVYDCTHYLKDHPGGVDSILINAGTDCTEEFEAIHSDKAKKMLEDYLIGKIDVTTDTNGNNVEINNKAIITQMHNNVALNNQREKIPCKLVSKKSISHNVRIFRFVLPYEDQLLGLPVGKHLFLCDTIENKLCMRAFTPISSVDEKGYFDLVVKIYFKGVHPKYPNGGLMSQHLDSLSIGSVLDIKGPLGHIEYIGKGSFLVHGEYKFAKRLAMLAGGTGITPIYQVVQAILKDPEDLTEMHVVYANRSEDDILLRKEMDEWAKKHERFKVWYVVQESKREGWEYSVGFISESILKNHVPKASEDTLALALACGPPPMIEGVKSNLEKLGYDIKNNLLVF 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02236 875 SUPERFAMILY E set domains 329 455 IPR014756 -
Trre5g02236 875 FunFam Sulfite oxidase, mitochondrial 510 591 - -
Trre5g02236 875 PANTHER SULFITE REDUCTASE 40 459 - -
Trre5g02236 875 FunFam Nitrate reductase 329 504 - -
Trre5g02236 875 CDD eukary_NR_Moco 69 454 - -
Trre5g02236 875 Gene3D - 68 319 IPR036374 -
Trre5g02236 875 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 618 730 IPR017927 GO:0016491
Trre5g02236 875 Pfam Oxidoreductase FAD-binding domain 623 729 IPR008333 -
Trre5g02236 875 FunFam NADH-cytochrome b5 reductase 608 724 - -
Trre5g02236 875 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 66 326 IPR036374 -
Trre5g02236 875 PRINTS Cytochrome B5 reductase signature 748 767 - -
Trre5g02236 875 PRINTS Cytochrome B5 reductase signature 844 852 - -
Trre5g02236 875 PRINTS Cytochrome B5 reductase signature 715 729 - -
Trre5g02236 875 PRINTS Cytochrome B5 reductase signature 670 677 - -
Trre5g02236 875 PRINTS Cytochrome B5 reductase signature 786 797 - -
Trre5g02236 875 PRINTS Cytochrome B5 reductase signature 649 660 - -
Trre5g02236 875 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 546 556 IPR001709 GO:0016491
Trre5g02236 875 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 748 767 IPR001709 GO:0016491
Trre5g02236 875 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 774 783 IPR001709 GO:0016491
Trre5g02236 875 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 786 797 IPR001709 GO:0016491
Trre5g02236 875 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 844 852 IPR001709 GO:0016491
Trre5g02236 875 SUPERFAMILY Riboflavin synthase domain-like 613 731 IPR017938 -
Trre5g02236 875 Pfam Cytochrome b5-like Heme/Steroid binding domain 517 586 IPR001199 -
Trre5g02236 875 Pfam Mo-co oxidoreductase dimerisation domain 325 455 IPR005066 GO:0016491|GO:0030151
Trre5g02236 875 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 543 550 IPR018506 GO:0020037
Trre5g02236 875 Gene3D Translation factors 610 724 - -
Trre5g02236 875 Gene3D - 329 504 - -
Trre5g02236 875 FunFam Nitrate reductase [NADH] 725 875 - -
Trre5g02236 875 Gene3D - 508 589 IPR036400 -
Trre5g02236 875 CDD cyt_b5_reduct_like 623 875 - -
Trre5g02236 875 Pfam Oxidoreductase NAD-binding domain 749 858 IPR001433 GO:0016491
Trre5g02236 875 Gene3D - 725 875 IPR039261 -
Trre5g02236 875 PRINTS Cytochrome B5 signature 574 586 IPR001199 -
Trre5g02236 875 PRINTS Cytochrome B5 signature 547 561 IPR001199 -
Trre5g02236 875 PRINTS Cytochrome B5 signature 537 547 IPR001199 -
Trre5g02236 875 PRINTS Cytochrome B5 signature 562 569 IPR001199 -
Trre5g02236 875 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 510 588 IPR036400 -
Trre5g02236 875 SMART Cyt_b5_2 515 587 IPR001199 -
Trre5g02236 875 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 512 587 IPR001199 -
Trre5g02236 875 PIRSF Nitr_rd_NADH 2 874 IPR012137 GO:0006809|GO:0042128|GO:0050464
Trre5g02236 875 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 135 170 IPR022407 GO:0043546
Trre5g02236 875 PRINTS Eukaryotic molybdopterin domain signature 185 200 IPR008335 GO:0016491
Trre5g02236 875 PRINTS Eukaryotic molybdopterin domain signature 358 372 IPR008335 GO:0016491
Trre5g02236 875 PRINTS Eukaryotic molybdopterin domain signature 84 98 IPR008335 GO:0016491
Trre5g02236 875 PRINTS Eukaryotic molybdopterin domain signature 276 289 IPR008335 GO:0016491
Trre5g02236 875 PRINTS Eukaryotic molybdopterin domain signature 260 273 IPR008335 GO:0016491
Trre5g02236 875 PRINTS Eukaryotic molybdopterin domain signature 424 436 IPR008335 GO:0016491
Trre5g02236 875 PRINTS Eukaryotic molybdopterin domain signature 437 450 IPR008335 GO:0016491
Trre5g02236 875 PRINTS Eukaryotic molybdopterin domain signature 106 122 IPR008335 GO:0016491
Trre5g02236 875 PRINTS Eukaryotic molybdopterin domain signature 327 339 IPR008335 GO:0016491
Trre5g02236 875 PRINTS Eukaryotic molybdopterin domain signature 372 384 IPR008335 GO:0016491
Trre5g02236 875 PRINTS Eukaryotic molybdopterin domain signature 159 170 IPR008335 GO:0016491
Trre5g02236 875 PRINTS Eukaryotic molybdopterin domain signature 243 259 IPR008335 GO:0016491
Trre5g02236 875 PRINTS Eukaryotic molybdopterin domain signature 170 182 IPR008335 GO:0016491
Trre5g02236 875 PRINTS Eukaryotic molybdopterin domain signature 399 409 IPR008335 GO:0016491
Trre5g02236 875 FunFam Nitrate reductase 70 319 - -
Trre5g02236 875 Pfam Oxidoreductase molybdopterin binding domain 118 297 IPR000572 -
Trre5g02236 875 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 717 870 IPR039261 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02236 Trre-Chr5 16919078 16923037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02236 624 866 NADPH P450 reductases AT5G17770 38.618 1.99e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02236 K10534 - gmx:732634 1326.61