Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02228 ATGAAGGAATTGCATAGAGCTCTGGAGAATCGTAGTTTAGGAGTTTCCAATGTCCAAGGAAAGGGTCGTTCTCTTTTTACTACTAGGGATTTCTACCCAGGGGAAGTGATTATTAGCCAAGAGCCATATGTTAGTGTTCCAACCCAAAAAAGGTGTGATGGATGTTTCACAACAACTAATCTTAGCAAGTGTTCACGTTGTCAAGTTGTTTGGTATTGTGGAACACCATGTCAGAAATCAGAGTGGAAGTTGCATCGTCTTGAATGTGAAGCACTCTCAAGGCTAGACAACTTTAAGAGAAAATCTATCACACCATCGATACGGTTGATGATTAAACTTTATATCCGAAGGAAGTTGCAAGATGAGAAGATCATTCCAACCACTGCTATGGACAACTACAAGTTAGTGGAGGCATTAGTGGCTCACATGTCTGACATCAAAGAGGAGCAGCTGGTGTTGTATGCACAGATGGCTAATCTTGTACACTTAATACTACAGTGGCCTGAAATCAATATAAAAGAGATTGCAGAAATTTTTTCCAAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTGAGACCTTTGGGAACAGGATTGTATCCTGTTGTTTCCATTATCAATCACAGCTGCTTGCCCAATTCAGTGTTGGTTTTTGAAGGAAAGGTAGCATCAGTACGTGCTTTACAACATGTACCCAAAGGGACTGAGGTATTGATAAGTTATATAGAGACAGCTGGAAGCACCGTGACTCGACAAAAGGCTCTCAAAGAGCAGTACTTATTCACTTGTGTTTGTCCCCGCTGTTCTAAAGTGGGTCAGTATGAAGATGTTCAAGAAAATGCAATTCTAGAAGGATACAGATGCAAAAATGAAACATGTGATGGTTTCTTGCTCCGCACAACTGATGGAAAAGCATTTCAATGCCAAGAATGCGGGTTAGTTAGAGACAAGGAAGAGATAAAGCAAATTGCAACTGAAATTAAATTGCTATCAGAAGAAGCTTCTGAGCCTTCTTCCAGTGACAATTATCAAGATGCTATTTCCGTATATAACATGATTGAGAAACTGCAAACAAAACTATATCATCCTTTCTCAATCAATTTGATGAATACACGAGAGACAATTTTGAAGTCACTAATGAAGCTGGAACATTGGAGGGAAGCTTTAGCATATTGCAAATTGACCATACCAATCTATCAAAGAGTGTATCCTGCTGTTCACCCTCTGCTTGGATTGCAGTATTATACTTGTGGAAAACTTGAATGGTATCTTGGAGACACTGAGGGAGCTGTTAAATCATTGACGAAAGCTGTGGATATACTAAGGATTACTCATGGCACAAATACTCCTTTTGTGAAGGAACTCTTGATGATGTTGGAGGAAGCTCGTGCAGAAGCGTCTTACAAATTGTCGTCCATAGAGGAGTAG 1434 0.3989 MKELHRALENRSLGVSNVQGKGRSLFTTRDFYPGEVIISQEPYVSVPTQKRCDGCFTTTNLSKCSRCQVVWYCGTPCQKSEWKLHRLECEALSRLDNFKRKSITPSIRLMIKLYIRRKLQDEKIIPTTAMDNYKLVEALVAHMSDIKEEQLVLYAQMANLVHLILQWPEINIKEIAEIFSKFACNAHTICDSELRPLGTGLYPVVSIINHSCLPNSVLVFEGKVASVRALQHVPKGTEVLISYIETAGSTVTRQKALKEQYLFTCVCPRCSKVGQYEDVQENAILEGYRCKNETCDGFLLRTTDGKAFQCQECGLVRDKEEIKQIATEIKLLSEEASEPSSSDNYQDAISVYNMIEKLQTKLYHPFSINLMNTRETILKSLMKLEHWREALAYCKLTIPIYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEGAVKSLTKAVDILRITHGTNTPFVKELLMMLEEARAEASYKLSSIEE 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02228 477 SMART set_7 11 250 IPR001214 GO:0005515
Trre5g02228 477 Pfam MYND finger 52 89 IPR002893 -
Trre5g02228 477 ProSiteProfiles SET domain profile. 11 244 IPR001214 GO:0005515
Trre5g02228 477 Coils Coil 315 335 - -
Trre5g02228 477 Gene3D Tetratricopeptide repeat domain 397 473 IPR011990 GO:0005515
Trre5g02228 477 ProSiteProfiles Zinc finger MYND-type profile. 52 89 IPR002893 -
Trre5g02228 477 SUPERFAMILY TPR-like 340 447 IPR011990 GO:0005515
Trre5g02228 477 Gene3D SET domain 24 270 IPR046341 -
Trre5g02228 477 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 15 463 - -
Trre5g02228 477 Pfam SET domain 22 243 IPR001214 GO:0005515
Trre5g02228 477 ProSitePatterns Zinc finger MYND-type signature. 52 89 IPR002893 -
Trre5g02228 477 Gene3D - 51 101 - -
Trre5g02228 477 Gene3D - 102 186 - -
Trre5g02228 477 SUPERFAMILY SET domain 12 243 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02228 Trre-Chr5 16785311 16793757 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre5g02228 SET 7.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02228 K11426 - gmx:100789518 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02228 5 16785311 16793757 Trre5g02228 5 16785311 16793757 ECH