Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02227 ATGGATGGGAAGTCTAACCTTCCGATCAAGCCAGATTCTTCTTCCCCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAACGTCACCGTCCTCTCGGTCAATCCAATATCATTAGACCAAGACGCACCATTCTTCTTCAACCTCAACATACAAACAACGATTCACTTCAAACTACCACCACTGTTGTTAACCCTTCTCAACATGCAAATAAACTTCAACAGGGGGCCAATGATGAAAAGGCCATTGAGTTGGAGAATTTGTCTTCTTATATGGGTTCACTTGGATTCACAGAAATGGAGTATGTTGAAGGCGATGAACCTGAAGATTCAATTGGACTCAACAATGATGATGATTCAAAGCAACCGAAAATTCAGCAGGTTGAGGCTGATTTTAGTTTGAGATCCGACGGAGGAATGACGAGGAGAACTACTGTTACGCGGGATAATTTGCAGCAGTTTAAAAACTTTCTAAGTCAGCCAGCGACACAATCTTCGGTGGTGGTACCTTGTGCTACGACTACGTCGGTTCATTCAACTTCAGCTCCCATGATGAATTCAACCACCCGTTTGCATCGAGATAGTGGGTCGCGCGTGGTTGCGGAACCTTTGGGAGAGATTGGTGTTTATCCTATAGCTGAAAGAGTTATGGAATCAGAAAATACAGATACTTCTGTGGAGAAAGACAGTAAAATGTTAGTTGATAAGGCTGCAATTTTGGTGCAAGCTTCCGATTCTTGTGTGGATGCTGAGTTAGCATCTAGAGAGTGTGACCAATCGAAGGAGCAACAAGAATGCTTGCTGAAAGAAACCGGCAATTCAAAATATGTTTCTTGTGGTGGTGACAAGATGACCGAAGTGAAAGAGCCTGCAGATGTTGCCAATGTACACCGTCTGGTGCCCAAAACATCATCTTTGGATGTAAAGTCTGAATCTTCTAAATTAGAAAAACGAGAGAAGGCTGCGAGTAGTAAAGGTTCGTCAGTTGCTAAGAAAAGGTCCTATGACCCTGACTTATTTTTTAAGGTTAATGGCAAGCTTTATCAACGTCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAGGTTATTTCATCAGATTGTAGGATATATGCACTTAAGAAGATCAAACTCAGGGGTCGTGATTATGCTACTGCATACGGGTTTTGTCAAGAGATTGAGTATCTAAATAGGCTGAGAGGAAAGGATAATATTATACAGCTTATCGATTATGAGGTGACTGACAAGGCTTTGCTTGAAGAAGTTATGAAAGGCTCTCTTAGTAATAAGGATGGCCGGGTCAAAGATGATGGATATATATACATGGTTCTTGAATACGGTGAAATTGATTTAGCTCACATGTTGTCCCAGAAGTGGAAGGAGTTGGATGGAACCCAAGAGACCATAGACGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAATACAATTCACGAGGAACGTATTGTGCATTCTGACTTGAAGCCTGCTAACTTCCTCCTCGTTAAGGGTTCCCTAAAACTGATTGACTTTGGTATCGCCAAAGCAATAATGAGTGATACTACTAATATCCAACGAGAATCACAGGTGGGTACTCTGAGTTACATGTCTCCGGAAGCATTTATGTGCAATGAGACTGATGCAAATGGAAACATCATCAAGTGCGGTCGACCATCAGATATCTGGTCTTTGGGATGCATCCTTTATCAAATGGTATATGGGAGAACCCCTTTTTCAGAATACAAGACATTTTGGGCCAAATTTAAAGTTATAACAGATCCAAATCATGAAATCACGTACGAACCGCTTTCCAATCCATGGCTAGTCGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGTTACTGCAACATCCTTTTCTTGCACCTCACGTACTACCTCACCCATGTTTGCCCCAAGACCATAGCTGTAAATTTGTACAACTTGTCGCTGAAACTTGTACATATGACCCTGAAGCATCCCAACTTTGTCAGCAGCTCCAACGTCTACTTGTTGATCCACTCGGGTTAACAACCCACTCACTAAATTCACAAGATCAACAAAGAACACTATTGTCCAAAATGTCTGAACTCTGTATTCAACTGCGGGAACGTTTGGTAGATACTGATAGGGAACCTTTGGTAGATACTGATATCAAGTAA 2199 0.4229 MDGKSNLPIKPDSSSPDFLRHVQAALKRHRPLGQSNIIRPRRTILLQPQHTNNDSLQTTTTVVNPSQHANKLQQGANDEKAIELENLSSYMGSLGFTEMEYVEGDEPEDSIGLNNDDDSKQPKIQQVEADFSLRSDGGMTRRTTVTRDNLQQFKNFLSQPATQSSVVVPCATTTSVHSTSAPMMNSTTRLHRDSGSRVVAEPLGEIGVYPIAERVMESENTDTSVEKDSKMLVDKAAILVQASDSCVDAELASRECDQSKEQQECLLKETGNSKYVSCGGDKMTEVKEPADVANVHRLVPKTSSLDVKSESSKLEKREKAASSKGSSVAKKRSYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLRGRDYATAYGFCQEIEYLNRLRGKDNIIQLIDYEVTDKALLEEVMKGSLSNKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGTQETIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRESQVGTLSYMSPEAFMCNETDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEITYEPLSNPWLVDLMKRCLAWDRNQRWRIPQLLQHPFLAPHVLPHPCLPQDHSCKFVQLVAETCTYDPEASQLCQQLQRLLVDPLGLTTHSLNSQDQQRTLLSKMSELCIQLRERLVDTDREPLVDTDIK 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02227 732 SMART serkin_6 347 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02227 732 FunFam serine/threonine-protein kinase mph1 isoform X2 340 427 - -
Trre5g02227 732 SUPERFAMILY Protein kinase-like (PK-like) 340 662 IPR011009 -
Trre5g02227 732 CDD PKc_Mps1 345 640 IPR027084 -
Trre5g02227 732 Coils Coil 249 269 - -
Trre5g02227 732 MobiDBLite consensus disorder prediction 308 328 - -
Trre5g02227 732 Gene3D Transferase(Phosphotransferase) domain 1 461 644 - -
Trre5g02227 732 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Trre5g02227 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Trre5g02227 732 MobiDBLite consensus disorder prediction 306 328 - -
Trre5g02227 732 Pfam Protein kinase domain 347 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02227 732 Gene3D Phosphorylase Kinase; domain 1 340 427 - -
Trre5g02227 732 ProSiteProfiles Protein kinase domain profile. 347 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02227 732 FunFam serine/threonine-protein kinase mph1 isoform X1 461 643 - -
Trre5g02227 732 PANTHER MIXED LINEAGE PROTEIN KINASE 41 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02227 Trre-Chr5 16779986 16784031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02227 353 640 MAP Kinase Kinase Kinase AT4G08470 28.866 1.85e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Trre5g02227 Pkinase 3.5e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02227 K08866 - gmx:100780144 987.252