Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02226 ATGGATGGGAAGTCTAACCTTCCGATCAAGCCAGATTCTTCTTCCCCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAACGTCACCGTCCTCTCGATACAGGTCAATCCAATATCATTAGACCAAGACGCACCATTCTTCTTCAACCTCAACATACAAACAACGATTCACTTCAAACTACCACCACTGTTGTTAACCCTTCTCAACATGCAAATAAACTTCAACAGGGGGCCAATGATGAAAAGGCCATTGAGTTGGAGAATTTGTCTTCTTATATGGGTTCACTTGGATTCACAGAAATGGAGTATGTTGAAGGCGATGAACCTGAAGATTCAATTGGACTCAACAATGATGATGATTCAAAGCAACCGAAAATTCAGCAGGTTGAGGCTGATTTTAGTTTGAGATCCGACGGAGGAATGACGAGGAGAACTACTGTTACGCGGGATAATTTGCAGCAGTTTAAAAACTTTCTAAGTCAGCCAGCGACACAATCTTCGGTGGTGGTACCTTGTGCTACGACTACGTCGGTTCATTCAACTTCAGCTCCCATGATGAATTCAACCACCCGTTTGCATCGAGATAGTGGGTCGCGCGTGGTTGCGGAACCTTTGGGAGAGATTGGTGTTTATCCTATAGCTGAAAGAGTTATGGAATCAGAAAATACAGATACTTCTGTGGAGAAAGACAGTAAAATGTTAGTTGATAAGGCTGCAATTTTGGTGCAAGCTTCCGATTCTTGTGTGGATGCTGAGTTAGCATCTAGAGAGTGTGACCAATCGAAGGAGCAACAAGAATGCTTGCTGAAAGAAACCGGCAATTCAAAATATGTTTCTTGTGGTGGTGACAAGATGACCGAAGTGAAAGAGCCTGCAGATGTTGCCAATGTACACCGTCTGGTGCCCAAAACATCATCTTTGGATGTAAAGTCTGAATCTTCTAAATTAGAAAAACGAGAGAAGGCTGCGAGTAGTAAAGGTTCGTCAGTTGCTAAGAAAAGGTCCTATGACCCTGACTTATTTTTTAAGGTTAATGGCAAGCTTTATCAACGTCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAGGTTATTTCATCAGATTGTAGGATATATGCACTTAAGAAGATCAAACTCAGGGGTCGTGATTATGCTACTGCATACGGGTTTTGTCAAGAGATTGAGTATCTAAATAGGCTGAGAGGAAAGGATAATATTATACAGCTTATCGATTATGAGGTGACTGACAAGGCTTTGCTTGAAGAAGTTATGAAAGGCTCTCTTAGTAATAAGGATGGCCGGGTCAAAGATGATGGATATATATACATGGTTCTTGAATACGGTGAAATTGATTTAGCTCACATGTTGTCCCAGAAGTGGAAGGAGTTGGATGGAACCCAAGAGACCATAGACGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAATACAATTCACGAGGAACGTATTGTGCATTCTGACTTGAAGCCTGCTAACTTCCTCCTCGTTAAGGGTTCCCTAAAACTGATTGACTTTGGTATCGCCAAAGCAATAATGAGTGATACTACTAATATCCAACGAGAATCACAGGTGGGTACTCTGAGTTACATGTCTCCGGAAGCATTTATGTGCAATGAGACTGATGCAAATGGAAACATCATCAAGTGCGGTCGACCATCAGATATCTGGTCTTTGGGATGCATCCTTTATCAAATGGTATATGGGAGAACCCCTTTTTCAGAATACAAGACATTTTGGGCCAAATTTAAAGTTATAACAGATCCAAATCATGAAATCACGTACGAACCGCTTTCCAATCCATGGCTAGTCGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGTTACTGCAACATCCTTTTCTTGCACCTCACGTACTACCTCACCCATGTTTGCCCCAAGACCATAGCTGTAAATTTGTACAACTTGTCGCTGAAACTTGTACATATGACCCTGAAGCATCCCAACTTTGTCAGCAGCTCCAACGTCTACTTGTTGATCCACTCGGGTTAACAACCCACTCACTAAATTCACAAGATCAACAAAGAACACTATTGTCCAAAATGTCTGAACTCTGTATTCAACTGCGGGAACGTTTGGTAGATACTGATAGGGAACCTTTGGTAGATACTGATATCAAGTAA 2205 0.4227 MDGKSNLPIKPDSSSPDFLRHVQAALKRHRPLDTGQSNIIRPRRTILLQPQHTNNDSLQTTTTVVNPSQHANKLQQGANDEKAIELENLSSYMGSLGFTEMEYVEGDEPEDSIGLNNDDDSKQPKIQQVEADFSLRSDGGMTRRTTVTRDNLQQFKNFLSQPATQSSVVVPCATTTSVHSTSAPMMNSTTRLHRDSGSRVVAEPLGEIGVYPIAERVMESENTDTSVEKDSKMLVDKAAILVQASDSCVDAELASRECDQSKEQQECLLKETGNSKYVSCGGDKMTEVKEPADVANVHRLVPKTSSLDVKSESSKLEKREKAASSKGSSVAKKRSYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLRGRDYATAYGFCQEIEYLNRLRGKDNIIQLIDYEVTDKALLEEVMKGSLSNKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGTQETIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRESQVGTLSYMSPEAFMCNETDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEITYEPLSNPWLVDLMKRCLAWDRNQRWRIPQLLQHPFLAPHVLPHPCLPQDHSCKFVQLVAETCTYDPEASQLCQQLQRLLVDPLGLTTHSLNSQDQQRTLLSKMSELCIQLRERLVDTDREPLVDTDIK 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02226 734 ProSiteProfiles Protein kinase domain profile. 349 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02226 734 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
Trre5g02226 734 PANTHER MIXED LINEAGE PROTEIN KINASE 42 675 - -
Trre5g02226 734 Gene3D Phosphorylase Kinase; domain 1 342 429 - -
Trre5g02226 734 Pfam Protein kinase domain 349 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02226 734 FunFam serine/threonine-protein kinase mph1 isoform X2 342 429 - -
Trre5g02226 734 MobiDBLite consensus disorder prediction 306 330 - -
Trre5g02226 734 CDD PKc_Mps1 347 642 IPR027084 -
Trre5g02226 734 Coils Coil 251 271 - -
Trre5g02226 734 FunFam serine/threonine-protein kinase mph1 isoform X1 463 645 - -
Trre5g02226 734 MobiDBLite consensus disorder prediction 310 330 - -
Trre5g02226 734 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Trre5g02226 734 SUPERFAMILY Protein kinase-like (PK-like) 342 664 IPR011009 -
Trre5g02226 734 Gene3D Transferase(Phosphotransferase) domain 1 463 646 - -
Trre5g02226 734 SMART serkin_6 349 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02226 Trre-Chr5 16779986 16784031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02226 355 642 MAP Kinase Kinase Kinase AT4G08470 28.866 2.03e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Trre5g02226 Pkinase 3.5e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02226 K08866 - gmx:100780144 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02226 5 16779986 16784031 Trre5g02226 5 16779986 16784031 ECH