Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02209 ATGTACATGGAAATGGACATGGACATGGATGCTATCCATGATCTCGACTTCTCCGGACACAGCACCCTCACAAATACCCCTTCTTCCGATGACGATTATGGTTGCAATTGGAACCAATGGTCTCCCATAGTTAACTGGGATACTTTCACTGGCACCCAGGATGGTTTCCATCACCTGATGGACACCATCATAGATGACAGAACCACCCTTCTCGACCAGCTCAGCCCAACAACAACCACCACCACCACCACAACCACAGATGAGGAAGAAGAAGAAACAGAAACAACAACAACCACCACCACGACAACAACAGAAAAAGCACAAGCGGTTGACGATGATATAAAAGGGCTAAAACTAGTGCACCTATTGATGGCTGGCGCGGAAGCCTTAACCGGTTCAACTAAAAACCGCGACTTAGCTCGTGTGATATTGGTTCGGCTCAAGGAGTTGGTTTCAAGCCATGCTCATGGCTCTAACATGGAAAGGCTCGCCGCTTATTTCACCGAAGCCCTTCAAGGATTACTAGAAGGCGCTGGGGGTGCACACAATAACAACAACAAACATTACCTCACAAACAGTGGTCCCCATGACAACCAAAACGACACACTCACTGCTTTCCAACTACTTCAAGACATGTCACCTTACGTCAAATTCGGCCACTTCACAGCCAATCAAGCCATAATCGAAGCCGTGGCCCACGAACGCCGTGTCCATATCATCGATTACGACATCATGGAAGGGGTCCAATGGGCCTCATTAATCCAATCTCTAGCTTCCAACAACAACAGTCCACATCTCCGGATAACCGCATTATCCCGGACAGGAGCAGGAAGGAGATCAATCGCCACCGTACAAGAAACCGGCAGGCGACTAACCTCCTTCGCTGCTTCTCTCGGTCAGCCTTTTTCGTTTCATCACTGCAGATTAGACTCCGACGAAACGTTCCGTCCTTCTACGTTAAAGCTTGTTCGTGGAGAGGCTTTGGTTTTTAACTGCATGCTGAATTTGCCTCATCTTAGTTACCGTGCACCTGATTCAGTTGCATCGTTTCTGAACGGAGCAAAAGCGTTGAATCCAAAGCTTGTAACGTTGGTAGAAGAAGAGGTTGGATCTGTTGTTGGTGGGTTTGTGGAAAGGTTCATGGACTCACTTCATCATTACTCAGCGGTGTTTGATTCATTGGAGGCTGGGTTTCCGATGCAGAATCGGGCTCGGGCTTTGGTGGAGCGGGTATTTTTTGGGCCGAGGATAGCGGGCTCGTTGGGCCGGATTTACAGAACAGGTGGAGAGGAGGAGAGAAAATCGTGGGGGGAGTGGTTAGGTGCGGCAGGGTTTATGGGAGTTCCAGTGAGCTTTGCGAATCATTGTCAAGCGAAGCTTTTGTTGGGTCTTTTTAATGACGGGTATAGAGTTGAAGAGGTGGGTGTAGGTAGTAATAAGTTGGTTTTGGATTGGAAATCACGGCGTTTGCTTTCTGCTTCACTATGGACTTGTTCTTCTTGTTCTTCTTCAGATTCTGATTTATAA 1527 0.4794 MYMEMDMDMDAIHDLDFSGHSTLTNTPSSDDDYGCNWNQWSPIVNWDTFTGTQDGFHHLMDTIIDDRTTLLDQLSPTTTTTTTTTTDEEEEETETTTTTTTTTTEKAQAVDDDIKGLKLVHLLMAGAEALTGSTKNRDLARVILVRLKELVSSHAHGSNMERLAAYFTEALQGLLEGAGGAHNNNNKHYLTNSGPHDNQNDTLTAFQLLQDMSPYVKFGHFTANQAIIEAVAHERRVHIIDYDIMEGVQWASLIQSLASNNNSPHLRITALSRTGAGRRSIATVQETGRRLTSFAASLGQPFSFHHCRLDSDETFRPSTLKLVRGEALVFNCMLNLPHLSYRAPDSVASFLNGAKALNPKLVTLVEEEVGSVVGGFVERFMDSLHHYSAVFDSLEAGFPMQNRARALVERVFFGPRIAGSLGRIYRTGGEEERKSWGEWLGAAGFMGVPVSFANHCQAKLLLGLFNDGYRVEEVGVGSNKLVLDWKSRRLLSASLWTCSSCSSSDSDL 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02209 508 ProSiteProfiles GRAS family profile. 110 497 IPR005202 -
Trre5g02209 508 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 93 492 IPR005202 -
Trre5g02209 508 Pfam GRAS domain family 119 497 IPR005202 -
Trre5g02209 508 MobiDBLite consensus disorder prediction 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02209 Trre-Chr5 16626392 16627918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02209 81 500 GRAS Transcription Factor Family AT3G54220 35.797 1.99e-54 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre5g02209 GRAS 1.3e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02209 - - tpra:123896871 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02209 5 16626392 16627918 Trre5g02209 5 16626392 16627918 ECH