Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02195 ATGTCTTTGAGTCCTCCAAGAGAAAGAATCAACAGCCAACGTAGAAACTTCCAACTCTACTGGTGCTTCCAATGCAACCGCACCGTCCGCGTCGCACCATATAACTCCTCCGAATTAATATGTCCACGTTGCTTCGGCCAATTCATATGCGAAATCAACATACCAAGACCACAACTCGTGGTAGACTTCACCGCACACGATCCTTCCCCAGAAGCGCGTTTGTTAGAAGCACTTTCTATAATGCTCGATCCACCCATCCGTCGCTTTAACACTGAAACCCAAACACGACGCCCACGTCGTTCCACACAACAAGTTCCCGTGCACCGTCACACAGGAGATCATAATCACCATCCTACACAAACACAACCCGAACCCGAACCCGGTATCCAACACCGTCCACGTACATGGGTAATTCTTCAACCCATTGATCCATCAAATTCAAACACATTTCAACCGGTGATTAATCCACGTGGACGACAAGGACCGATACCACGTGGCGTTGATTCTAGAGATTACTTTTTCGGTCCAGGATTTAACGAACTAATAGATCAGATAACAGAAAACGACCGGCAAGGACCACCGCCGGTACCAGAAAGAGGTATAAACGCGATTCCGACGGTGAAAATCGAAAGCAAAAATCTGAAAGAGAATTCACATTGTCCTGTTTGTCAAGAAGAATTTGAAATTGGCGGTGAAGCGAGGGAACTTCCATGTAAACATATATATCATTCTGATTGTATTGTTCCTTGGCTTAGACTTCATAATTCTTGTCCAATTTGTCGTCAAGAGATTTCAGTTTCTTCAGAAGAAGATGAAGATGAATGTGGTGAAGAAGGTGGTGAAGGTAGGTTACGTAGGTGTTTGAGGTGGACTCGTCTTTCTTCTCTTTGGCCTTTTCAAGGAAGGTATCGGAGAGTTCATCCTCAAAGAGATAATGGTTCTGCTTCTTCTTCGACAATAAGGGATTCTAATCCAAGGCGACTTTCTTGTTGCATTCTTTAA 1002 0.4441 MSLSPPRERINSQRRNFQLYWCFQCNRTVRVAPYNSSELICPRCFGQFICEINIPRPQLVVDFTAHDPSPEARLLEALSIMLDPPIRRFNTETQTRRPRRSTQQVPVHRHTGDHNHHPTQTQPEPEPGIQHRPRTWVILQPIDPSNSNTFQPVINPRGRQGPIPRGVDSRDYFFGPGFNELIDQITENDRQGPPPVPERGINAIPTVKIESKNLKENSHCPVCQEEFEIGGEARELPCKHIYHSDCIVPWLRLHNSCPICRQEISVSSEEDEDECGEEGGEGRLRRCLRWTRLSSLWPFQGRYRRVHPQRDNGSASSSTIRDSNPRRLSCCIL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02195 333 MobiDBLite consensus disorder prediction 307 326 - -
Trre5g02195 333 Pfam Ring finger domain 219 261 IPR001841 -
Trre5g02195 333 MobiDBLite consensus disorder prediction 310 325 - -
Trre5g02195 333 ProSiteProfiles Zinc finger RING-type profile. 220 261 IPR001841 -
Trre5g02195 333 MobiDBLite consensus disorder prediction 106 120 - -
Trre5g02195 333 SUPERFAMILY RING/U-box 201 267 - -
Trre5g02195 333 SMART ring_2 220 260 IPR001841 -
Trre5g02195 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 115 264 - -
Trre5g02195 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 267 IPR013083 -
Trre5g02195 333 FunFam E3 ubiquitin-protein ligase RING1-like 184 267 - -
Trre5g02195 333 CDD RING-H2_RNF126-like 220 261 - -
Trre5g02195 333 MobiDBLite consensus disorder prediction 87 130 - -
Trre5g02195 333 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02195 Trre-Chr5 16516542 16518541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02195 192 311 C3H Transcription Factor Family AT1G68180 43.802 1.68e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02195 K11982 - gmx:100787399 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02195 5 16516542 16518541 Trre5g02195 5 16516542 16518541 ECH