Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02192 ATGGTTAAGTCAGAGATTAACAAGAAGATCAAAACAGAACCATTAACAAAACCAAATATTATCTCAGATATTAGCAAGAAAAAGAAGTACAAAGGAGTAAGAATGAGGAGTTGGGGTTCTTGGGTTTCTGAGATTAGAGCACCAAATCAAAAAACAAGAATTTGGTTAGGTTCTTATTCAACTCCAGAAGCAGCTGCTAGAGCTTATGATGCTGCACTTCTTTGTCTTAAAGGTTCTTCCTCCGCATCAAATCTCAATTTTCCACTAAACTCTTGTTCACATTATTGTAATATTAATAATCCTCAAGATATGTCTCCAAAATCAATTCAAAGAGTTGCTGCAGCTGCTGCAAATAGTTTCATTGACAACAATAATGTTAATGTTAGCACTACTACTACTACTACAACTTCATCATCTTCATCATCATTGGTTTCATCTCCATCATCAATGGCTTCTTCTGATGATGTTTATGATCTAGCTAATGATGGATCAATGGCTATGATATCAGAAACTAATTGGTATGGATTAGAAGGTTTACAATCTCCTAAATATGTTGATCATATGTTGTTAAGTGATTCTTTCTTTGATATTGATTCTTTATCACATTTGCTTAATGATGATGTGTATGAAGAAAGTGATATTAGATTGTGGAATTTCAGCTGA 663 0.3318 MVKSEINKKIKTEPLTKPNIISDISKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSSASNLNFPLNSCSHYCNINNPQDMSPKSIQRVAAAAANSFIDNNNVNVSTTTTTTTSSSSSSLVSSPSSMASSDDVYDLANDGSMAMISETNWYGLEGLQSPKYVDHMLLSDSFFDIDSLSHLLNDDVYEESDIRLWNFS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02192 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 162 - -
Trre5g02192 220 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Trre5g02192 220 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Trre5g02192 220 Gene3D AP2/ERF domain 28 90 IPR036955 GO:0003700|GO:0006355
Trre5g02192 220 FunFam ethylene-responsive transcription factor ERF014-like 28 90 - -
Trre5g02192 220 MobiDBLite consensus disorder prediction 130 152 - -
Trre5g02192 220 SUPERFAMILY DNA-binding domain 29 88 IPR016177 GO:0003677
Trre5g02192 220 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Trre5g02192 220 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Trre5g02192 220 SMART rav1_2 29 94 IPR001471 GO:0003700|GO:0006355
Trre5g02192 220 ProSiteProfiles AP2/ERF domain profile. 29 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02192 Trre-Chr5 16503617 16504279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02192 30 219 AP2-EREBP Transcription Factor Family AT1G21910 48.259 7.20e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre5g02192 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02192 - - cam:101495993 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02192 5 16503617 16504279 Trre5g02192 5 16503617 16504279 ECH