Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02189 ATGACCAATGCCAAAAGTGATCGAATTGTTAGATTAAAACTTCTATTTACCAATGCTAAACCATATCTTTTAATGATTGGCCTTCAATTTGGTATGGCTGGTAATTATATCTTTGGCAAGGATTTTCTTAACCGTGGAATGAGCCGTTTCGTGTTCATTGTATATCGCAATGCCATGGCCGCAGTCGCTGTTGCCCCCTTTGCACTCATTTTTGAAAGGAAAAAAAGGCCCAAGATGACACTATCTATCTTCCTACAGATAATGGTGCTGGGATTTCTAGAGCCAGTTTTTAACCAAAGCTTCACTTACTTGGGGATGAAGTATACTTCAGCTTCATTCACTTCTGCTATTATGAATGCCGTGCCTTCTATAACCTTTCTGCTTGCTGTCATTGTCAGGTTGGAGCTTCTTAAATGGAAGGATATTAGAAGTCAAGCCAAAGTGTTTGGAACATTAGTAACCTTTGGTGGTGCTTTGGTAATGGCAATTTACAAAGGACCTGGATTCAACATTTTTCATTCTGGAAGCACAACTCAAAATCAAAATGGAACTCAAGGATCCTCTCATAACCACCAAACTTCTGGAGCTCTTTATATACTAATGGGTTGTGTTGCTTTATCTTCTTTCTACATTTTGCAGTCCGTAACATTAAAAAAATATCCGGCGGAGCTATCATTGGCAACCTTGATATGCCTGACGGGAGGGGCACAGGCAACTGCAGTGGCCCTTGTGGCCGAGCGTCACTCACACGCTTGGACCATTGGTTGGGATTACAGGCTCTATGCTCCTCTTTACACGGGAATAGTTAGTTCAGGAATTGCATACTATGTTCAAGGGCTGGTGATGCAAATGAGAGGGCCTGTATTTGCAACAGCCTTTAATCCTCTTTGCATGATCATTGTTGCTGGTTTAGGCTCCTTTATATTAGGTGAAAATCTCTATCTTGGAAGTATCATTGGAGCTGTTATCATAGCACTAGGCCTTTACACAGTTGTGTGGGGAAAAGCCAAAGATTATTCAGAATCAGACTCCAAATTACCATCATCAGAAGATACAAAGTCACTTCCAAGTACTTCAATGGATGATCCCAAAATTGATATTATTTCTGTTAACATGGAAAATCAACCACCAGCAAATGATAGATTAGAAGGGATCAACAAATTGGAGAAAGAATCAGAGTTGTATGTTACAACAGAAGTTTACTAG 1206 0.4013 MTNAKSDRIVRLKLLFTNAKPYLLMIGLQFGMAGNYIFGKDFLNRGMSRFVFIVYRNAMAAVAVAPFALIFERKKRPKMTLSIFLQIMVLGFLEPVFNQSFTYLGMKYTSASFTSAIMNAVPSITFLLAVIVRLELLKWKDIRSQAKVFGTLVTFGGALVMAIYKGPGFNIFHSGSTTQNQNGTQGSSHNHQTSGALYILMGCVALSSFYILQSVTLKKYPAELSLATLICLTGGAQATAVALVAERHSHAWTIGWDYRLYAPLYTGIVSSGIAYYVQGLVMQMRGPVFATAFNPLCMIIVAGLGSFILGENLYLGSIIGAVIIALGLYTVVWGKAKDYSESDSKLPSSEDTKSLPSTSMDDPKIDIISVNMENQPPANDRLEGINKLEKESELYVTTEVY 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02189 401 SUPERFAMILY Multidrug resistance efflux transporter EmrE 55 165 - -
Trre5g02189 401 PANTHER WAT1-RELATED PROTEIN 20 343 IPR030184 GO:0016020|GO:0022857
Trre5g02189 401 MobiDBLite consensus disorder prediction 340 363 - -
Trre5g02189 401 Pfam EamA-like transporter family 194 332 IPR000620 GO:0016020
Trre5g02189 401 Pfam EamA-like transporter family 20 161 IPR000620 GO:0016020
Trre5g02189 401 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02189 Trre-Chr5 16470977 16474233 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02189 10 375 Nodulin-like Gene Family AT2G37460 45.946 5.17e-117 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02189 - - gmx:100782835 578.556