Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02177 ATGCAAACAACAACACTATTGTTCTTGTTCCTCTCATCATTACTCTTCATAACAACAACCTCAAAATCAACAATCGAACCATGCACAAACTCAGACACATGTAACGCATTACTCGGTTACACACTCTACACAAATCTCAAAGTCTCCGAAGTTTCTTCTCTTTTTCAAATCGATCCAATCTCTCTTCTAACCGCCAATGCCATTGATATCTCATATCCAGATGTAGAACATCACATCCTCCCTTCAAAACTTTACCTCAAAATCCCAATCTCATGTTCATGTGTTGATGGAATTCGTAAATCTGTTTCAACAAACTATAAGATTCGTCCTTCTGATACTCTTTCATCAATTGCTGATTCTGTTTATGGTGGTTTAGTTTCTTCTGATCAACTTAGAGAAGCTAATTCTATAACTGATCCTAATGTTCTTGATGTTGGACAGAACCTTGTTGTTCCTCTTCCTTGTACTTGTTTCAATGGTTCTGATAATGCTTTGCCTGCTATTTATTTGTCTTATGTTGTTCAGCCACTTGATAGTTTAGGTTCTATTGCTTCTAGGTATTTTACTACTCTTACTGATTTGATGAATGTTAATGCTTTGGGAGGTACTTCTATCTCTAATGGTGATATTCTTGCTATTCCTATTCCGGCTTGTGCTTCAAATTTCCCAAAATATTCTTCTGATTTTGGCTTGCTTGTCCCTAATGGAAGTTATGCCATTACAGCAGGCCATTGTGTGCAATGTAGCTGTGGACCCCGAAACTTAAATTTGTACTGTATGCCAGCTTCTCTAGCTGTTTCTTGCTCCAGCATGCAATGTAAAAACAGCAATCTTATGCTCGGCAATGTTACCATTCAACAGACTAGTGGTGGTTGCAATGTGACTTCTTGCATTTATGATGGTATTGCTAATGGCACCATAGCGACAACGTTGACTCCATCCCTTCAGCCTCGATGTCCAGGGCAGCAAGAATTCCCTCCTCTTATCGCCCCACCTACATCTGTTGAGAGAGATTCAGTATTTGCACCGGCACCATCACCATCATCGCTGCTAGACGGAACTGATGGAAGATCACCCAAATCATCTTTCGTGCCTTCAACAGGATTTACTCCTGCCAATGGCCCTATTAGTGGAATTTCTTCTGGTGCTTCTGCTGCATGCTCCTTGGTGAAACCCTTACCCACGTTGACGCTTCCACTTGTGTTGTTACTTGTCAAGTTCATGATTCCTGTGGCATTGTAA 1242 0.4058 MQTTTLLFLFLSSLLFITTTSKSTIEPCTNSDTCNALLGYTLYTNLKVSEVSSLFQIDPISLLTANAIDISYPDVEHHILPSKLYLKIPISCSCVDGIRKSVSTNYKIRPSDTLSSIADSVYGGLVSSDQLREANSITDPNVLDVGQNLVVPLPCTCFNGSDNALPAIYLSYVVQPLDSLGSIASRYFTTLTDLMNVNALGGTSISNGDILAIPIPACASNFPKYSSDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTIQQTSGGCNVTSCIYDGIANGTIATTLTPSLQPRCPGQQEFPPLIAPPTSVERDSVFAPAPSPSSLLDGTDGRSPKSSFVPSTGFTPANGPISGISSGASAACSLVKPLPTLTLPLVLLLVKFMIPVAL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02177 413 SMART LysM_2 171 214 IPR018392 -
Trre5g02177 413 SMART LysM_2 105 152 IPR018392 -
Trre5g02177 413 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 5 323 - -
Trre5g02177 413 Pfam LysM domain 106 152 IPR018392 -
Trre5g02177 413 Pfam LysM domain 172 214 IPR018392 -
Trre5g02177 413 MobiDBLite consensus disorder prediction 351 367 - -
Trre5g02177 413 Gene3D LysM domain 100 160 IPR036779 -
Trre5g02177 413 CDD LysM 106 151 IPR018392 -
Trre5g02177 413 SUPERFAMILY LysM domain 170 215 IPR036779 -
Trre5g02177 413 SUPERFAMILY LysM domain 105 153 IPR036779 -
Trre5g02177 413 Gene3D LysM domain 161 222 IPR036779 -
Trre5g02177 413 ProSiteProfiles LysM domain profile. 104 151 IPR018392 -
Trre5g02177 413 MobiDBLite consensus disorder prediction 338 367 - -
Trre5g02177 413 ProSiteProfiles LysM domain profile. 170 213 IPR018392 -
Trre5g02177 413 CDD LysM 171 213 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02177 Trre-Chr5 16369797 16372850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02177 9 388 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 69.713 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02177 - - gmx:100808966 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02177 5 16369797 16372850 Trre5g02177 5 16369797 16372850 ECH