Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02176 ATGGCTGGTCCCGTCACGGATCTCAGTCCCTCCGACAATCCCGCCACTCCGCCGGTCCGTAATGTCCGCCGGAGGTTGGTCCAATCAACGCTCTTCCCTCACAAGCCACCACAACCCCGTAACAAACCAGAGGAAAACGAGGAAAGCGGTGACGAACAAGATGAGGATTACTGCGATACGAAGAATCGCAAGAAGAGAAAATCCAAAGGAAAAATCACTCCCGTAAACAAAGGTTCCAAGAGTGCTACACCAAAGAAAAATGCTAGTGGAAAGAAGCAGAGTGATGGAAAAACCTCTATAGCTAATGCAATTATGGGGTCAACTTCGCGGAATGTGTTGTCTGATTTTGATAAGGTTGTTATACCTAAGCCTGATTTGCGGTTAGAGGCAAAATTATCAGCTGAGGAAAATTCAAGGATGTTTGCAGGACGGCAAGTGCATCCATTTTTTTCATCGTGTAAAGCGGGGAAGAAAGTTCAAGAGCTGTCTGAACCAGGAAGTGATGCATTCAAAGCTAAGAGTGGGAATGGAAGCATTACCTGTGGTCCTATTCATGTTTTTGAAAATATCAAGGATGATACCTCATCCCTAGACTGGAGAAACTGGACGTTTTTGGAAAATTCCACCTATGTGAACAGTGGTTCAGAAAGTTCAAATTCATCTGTTTTGGGGGCTTCTGTCGAATGCTTAAATTTTGACAAGCTTCTTAGTACCTTGGATCCAGTGGGAGCTTCAAGTTCTCAGAATGCCTCAAATTCTTTGGATATATTTTCTACGTGTCCAGAAAATATGCAAGAAACATCACTGTCAAACTCAACTTTACCAGAGGAACAAACAATAAGTGCTCCGATGCCAAAAGATGGCAAAGTGGACTTGGAGGTGGATGAATCTGGTACATCTTCTGTGGAAGCTGGCTATTTTAGAAAGTCACATACTGGTGAGCCGCTGAGTAGATTTCTTCAAGAAAGTCTGAGGTCATACTATATTGGTTGTGAGGATAAGGCAGAAGGCAGCTTATGGACATACAAATACAAGCCAACTAAGGCCGTTGAGGTATGTGGTAATGATGAAGCTGTGAATTTCTTGAGTGACTGGCTACATCAGTGGCATGAAAGACGTTACAAACCCAGGAAGGATACGTCCAATAGGGATACAAGGGTCATTCAAGATGACGATGATGATTATATCTGTTCTGACAGTGACTATGATTCGGAAGATATGAATGAGGATTCCCTGCAGAATGTTCTTTTAGTTACAGGACCAATAGGGAGTGGCAAGTCTGCAGCAATCTATGCTTGTGCCCAAGAGCATGGCTTTGACATATTAGAGCTCAATGCATCAGATTGTAGAAATGGGACTGTTGTCAAGCAATATTTTGGAGATACTCTTGGTTCACATGGGTTCAAAAGGTTATCAGAACACACTGTGAGTTCACAGAAGATGACTACAAAGTTGCCCCCAGCTCCTGCTTTGGTTAATGGTAAAGCTGCAGATGAGGTGAATGACGGAGTAGTTGAACTAATAACCATATCTGATGATGAAGCTTGTAGCCCTGGTGAAATATCACAGAAGTTACATGGCAAGAATAATGTTGCATGTGATAAAGTCCAAACTTTGATTCTGGTTGAGGATGTGGACATACTTTTTCCTGAAGATCGTGGATGTATTGCTGCCATACAACAGATTGCCGAGACAGCAAGGGGGCCAATTATATTGACCAGCAATAGTGATAATCCCGGCCTTCCAGATAATTTTGATAGGCTTCAAGTTTCATTCTCATTGCCAACACCAAAGGAGTTGCTTTGCCATTTGTACTCTGTTTGTATTAGAGAAGGAGCCAGCATCCATCCTCTTCTACTGGAGAAGTTTATACAATCATGTGATGGAGACATCAGGAAAACCATTATGCATCTTCAGTTCTGGTTGCAGAGTAAAATATTTAAAAAAGATCTAAAAGCACATACAGGTTATGTCTCACTTCCATTTGATCTTGAGGTTGGTCATCAGATACTACCCAAGATAATGCCGTGGGATTTCCCCTCAGAGATATCCGAACTAATTGAGAACGAATTTGTCAAATCAGTAAATCAAATGGAAGATAATTCCAGTTTGCAAGGGTTAGTTGATGAAGAGCTTCTTCACATAAATGAAAGTCAAAATGATTTAGATGAGCAGTATATGGAGACTGATTATATAAAAGCCAAGAAGGTGGAGATGATTCAGAGAAATGGGTCTATAACAGATTACTGTGAGCTTGAAATTCAATGCAAAGCTATTTCAGAGTTTTCCAATTCTTCTGGATCCCCTGTAGCATCCTATCTGCAAAATGGTCGAAGGAAACTTGTAGTAATGTCCTCTGATTCTGAAGAGGAGGATTCAAATAATGGATATCCTCAAGACACAGGCGATGGAGCTAACAAGAGACATTCCATCAAAGGAAATAATGAATGTACCTCTGAGTTTCAGTTGAATGATAATTTCCCCAGCACATCTGTTCGTAAACTGGTTTGTTCTGAATTGGAGGATTCAGATGATGAACATGTTAAATATTCAGAAGCAGTTGATGTTACTTGCATAAATGATACATCTCAATCATTTGATATATCCTGTGTACCAGAATCAACGTTTGTTCCTGAGACTGCAATTGAAAATGGAACCGATACAATGTCTGGAGCGGTGTCTTCTGGCCACTGTCTAGAGGTTTCTATGAATAATGAGTTAAAACCGTCCACTTTAAGTGTTCGCAGGCGCTTGGCAAAATTGTCAGAAAATTCAGATATATTGATGGATACTGAAGTTCCAGATTCTTCTCAGAAAGATGCTCTACGAGATTTTCTAGATGAAAATATGGAAACTACAATTATCAAGGTGATGGATGAGTGCAGTCGTGTGGATTTCAAACTAAAGTCAACATTTGTTGAGTCCAGTCCATCATTGGAAACAGATGTGGTACAGAATTTGTGGGAAAAACTCCGACAAATGGATTTAAAACAGCATGCTATCTCAGAAAAGCTAGGTGTTTCTCAAGTTGTTAAACTTGCTAGTGGCTTGAGTAATCTAATTTCAGAAGCGGACTTGTTTCATAATTACCAACATAAACATGATATTTTAGAGCCCCGAAGTTTCGTTTCTAATGAAACTACAACTAGTTGGTACAATGATGAAACAATGATGTCCAGCGTTGCTGTGCATGGGTTTTGTTTTTATGTTAAACTTATAGCAGATGTTGGATCAAAGCTAGGTTGTGCGAATAAGATTGATTTAACTTCGGAGGTGTTAGCTTCCACAACTAATACTATGGCATTGGGGAAATTATCCAGACTGGATATTGCCAAAAACACAGTTATTTATACCGGGAAGGAGTTAGAGTTGAACAACCAAATGGAGAGTGAAAATAAAGCATCTCTGTTTGAGGTTGTCCAATCCATTGTTCCTGCAAGAATATCCTTAGCATTGAAAGGTGATATCTTCAATGAATATCTATCTTCATTGTGCCAAATTTCAAGGTCAGAAGCAGTCCGTGTTTCGCAAGGCGTTGAAAAGAAGAGAAGAGGAAGGTCGCGGGGTGCTCAACATTATTTGAGCAGATGCACAATGTTGTCTCCCGAAGATATAACGTTGGTCAGTGGTGATTTGTACAGGAAGATTTCCTCACAACATACAATTAATGTGGAAAGTAAACTACTATAG 3690 0.403 MAGPVTDLSPSDNPATPPVRNVRRRLVQSTLFPHKPPQPRNKPEENEESGDEQDEDYCDTKNRKKRKSKGKITPVNKGSKSATPKKNASGKKQSDGKTSIANAIMGSTSRNVLSDFDKVVIPKPDLRLEAKLSAEENSRMFAGRQVHPFFSSCKAGKKVQELSEPGSDAFKAKSGNGSITCGPIHVFENIKDDTSSLDWRNWTFLENSTYVNSGSESSNSSVLGASVECLNFDKLLSTLDPVGASSSQNASNSLDIFSTCPENMQETSLSNSTLPEEQTISAPMPKDGKVDLEVDESGTSSVEAGYFRKSHTGEPLSRFLQESLRSYYIGCEDKAEGSLWTYKYKPTKAVEVCGNDEAVNFLSDWLHQWHERRYKPRKDTSNRDTRVIQDDDDDYICSDSDYDSEDMNEDSLQNVLLVTGPIGSGKSAAIYACAQEHGFDILELNASDCRNGTVVKQYFGDTLGSHGFKRLSEHTVSSQKMTTKLPPAPALVNGKAADEVNDGVVELITISDDEACSPGEISQKLHGKNNVACDKVQTLILVEDVDILFPEDRGCIAAIQQIAETARGPIILTSNSDNPGLPDNFDRLQVSFSLPTPKELLCHLYSVCIREGASIHPLLLEKFIQSCDGDIRKTIMHLQFWLQSKIFKKDLKAHTGYVSLPFDLEVGHQILPKIMPWDFPSEISELIENEFVKSVNQMEDNSSLQGLVDEELLHINESQNDLDEQYMETDYIKAKKVEMIQRNGSITDYCELEIQCKAISEFSNSSGSPVASYLQNGRRKLVVMSSDSEEEDSNNGYPQDTGDGANKRHSIKGNNECTSEFQLNDNFPSTSVRKLVCSELEDSDDEHVKYSEAVDVTCINDTSQSFDISCVPESTFVPETAIENGTDTMSGAVSSGHCLEVSMNNELKPSTLSVRRRLAKLSENSDILMDTEVPDSSQKDALRDFLDENMETTIIKVMDECSRVDFKLKSTFVESSPSLETDVVQNLWEKLRQMDLKQHAISEKLGVSQVVKLASGLSNLISEADLFHNYQHKHDILEPRSFVSNETTTSWYNDETMMSSVAVHGFCFYVKLIADVGSKLGCANKIDLTSEVLASTTNTMALGKLSRLDIAKNTVIYTGKELELNNQMESENKASLFEVVQSIVPARISLALKGDIFNEYLSSLCQISRSEAVRVSQGVEKKRRGRSRGAQHYLSRCTMLSPEDITLVSGDLYRKISSQHTINVESKLL 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02176 1229 MobiDBLite consensus disorder prediction 74 98 - -
Trre5g02176 1229 MobiDBLite consensus disorder prediction 784 808 - -
Trre5g02176 1229 MobiDBLite consensus disorder prediction 266 291 - -
Trre5g02176 1229 Gene3D - 337 590 IPR027417 -
Trre5g02176 1229 Gene3D - 595 658 - -
Trre5g02176 1229 MobiDBLite consensus disorder prediction 1 98 - -
Trre5g02176 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 648 IPR027417 -
Trre5g02176 1229 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 10 1218 IPR004582 GO:0006281
Trre5g02176 1229 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 597 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02176 Trre-Chr5 16358051 16367174 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02176 340 640 Core DNA Replication Machinery Family AT5G22010 21.725 1.42e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02176 K26118 - gmx:100784209 1518.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02176 5 16358051 16367174 Trre5g02176 5 16358051 16367174 ECH