Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02175 ATGGCTGGTCCCGTCACGGATCTCAGTCCCTCCGACAATCCCGCCACTCCGCCGGTCCGTAATGTCCGCCGGAGGTTGGTCCAATCAACGCTCTTCCCTCACAAGCCACCACAACCCCGTAACAAACCAGAGGAAAACGAGGAAAGCGGTGACGAACAAGATGAGGATTACTGCGATACGAAGAATCGCAAGAAGAGAAAATCCAAAGGAAAAATCACTCCCGTAAACAAAGGTTCCAAGAGTGCTACACCAAAGAAAAATGCTAGTGGAAAGAAGCAGAGTGATGGAAAAACCTCTATAGCTAATGCAATTATGGGGTCAACTTCGCGGAATGTGTTGTCTGATTTTGATAAGGTTGTTATACCTAAGCCTGATTTGCGGTTAGAGGCAAAATTATCAGCTGAGGAAAATTCAAGGATGTTTGCAGGACGGCAAGTGCATCCATTTTTTTCATCGTGTAAAGCGGGGAAGAAAGTTCAAGAGCTGTCTGAACCAGGAAGTGATGCATTCAAAGCTAAGAGTGGGAATGGAAGCATTACCTGTGGTCCTATTCATGTTTTTGAAAATATCAAGGATGATACCTCATCCCTAGACTGGAGAAACTGGACGTTTTTGGAAAATTCCACCTATGTGAACAGTGGTTCAGAAAGTTCAAATTCATCTGTTTTGGGGGCTTCTGTCGAATGCTTAAATTTTGACAAGCTTCTTAGTACCTTGGATCCAGTGGGAGCTTCAAGTTCTCAGAATGCCTCAAATTCTTTGGATATATTTTCTACGTGTCCAGAAAATATGCAAGAAACATCACTGTCAAACTCAACTTTACCAGAGGAACAAACAATAAGTGCTCCGATGCCAAAAGATGGCAAAGTGGACTTGGAGGTGGATGAATCTGGTACATCTTCTGTGGAAGCTGGCTATTTTAGAAAGTCACATACTGGTGAGCCGCTGAGTAGATTTCTTCAAGAAAGTCTGAGGTCATACTATATTGGTTGTGAGGATAAGGCAGAAGGCAGCTTATGGACATACAAATACAAGCCAACTAAGGCCGTTGAGGTATGTGGTAATGATGAAGCTGTGAATTTCTTGAGTGACTGGCTACATCAGTGGCATGAAAGACGTTACAAACCCAGGAAGGATACGTCCAATAGGGATACAAGGGTCATTCAAGATGACGATGATGATTATATCTGTTCTGACAGTGACTATGATTCGGAAGATATGAATGAGGATTCCCTGCAGAATGTTCTTTTAGTTACAGGACCAATAGGGAGTGGCAAGTCTGCAGCAATCTATGCTTGTGCCCAAGAGCATGGCTTTGACATATTAGAGCTCAATGCATCAGATTGTAGAAATGGGACTGTTGTCAAGCAATATTTTGGAGATACTCTTGGTTCACATGGGTTCAAAAGGTTATCAGAACACACTGTGAGTTCACAGAAGATGACTACAAAGTTGCCCCCAGCTCCTGCTTTGGTTAATGGTAAAGCTGCAGATGAGGTGAATGACGGAGTAGTTGAACTAATAACCATATCTGATGATGAAGCTTGTAGCCCTGGTGAAATATCACAGAAGTTACATGGCAAGAATAATGTTGCATGTGATAAAGTCCAAACTTTGATTCTGGTTGAGGATGTGGACATACTTTTTCCTGAAGATCGTGGATGTATTGCTGCCATACAACAGATTGCCGAGACAGCAAGGGGGCCAATTATATTGACCAGCAATAGTGATAATCCCGGCCTTCCAGATAATTTTGATAGGCTTCAAGTTTCATTCTCATTGCCAACACCAAAGGAGTTGCTTTGCCATTTGTACTCTGTTTGTATTAGAGAAGGAGCCAGCATCCATCCTCTTCTACTGGAGAAGTTTATACAATCATGTGATGGAGACATCAGGAAAACCATTATGCATCTTCAGTTCTGGTTGCAGAGTAAAATATTTAAAAAAGATCTAAAAGCACATACAGGTTATGTCTCACTTCCATTTGATCTTGAGGTTGGTCATCAGATACTACCCAAGATAATGCCGTGGGATTTCCCCTCAGAGATATCCGAACTAATTGAGAACGAATTTGTCAAATCAGTAAATCAAATGGAAGATAATTCCAGTTTGCAAGGGTTAGTTGATGAAGAGCTTCTTCACATAAATGAAAGTCAAAATGATTTAGATGAGCAGTATATGGAGACTGATTATATAAAAGCCAAGAAGGTGGAGATGATTCAGAGAAATGGGTCTATAACAGATTACTGTGAGCTTGAAATTCAATGCAAAGCTATTTCAGAGTTTTCCAATTCTTCTGGATCCCCTGTAGCATCCTATCTGCAAAATGGTCGAAGGAAACTTGTAGTAATGTCCTCTGATTCTGAAGAGGAGGATTCAAATAATGGATATCCTCAAGACACAGGCGATGGAGCTAACAAGAGACATTCCATCAAAGGAAATAATGAATGTACCTCTGAGTTTCAGTTGAATGATAATTTCCCCAGCACATCTGTTCGTAAACTGGTTTGTTCTGAATTGGAGGATTCAGATGATGAACATGTTAAATATTCAGAAGCAGTTGATGTTACTTGCATAAATGATACATCTCAATCATTTGATATATCCTGTGTACCAGAATCAACGTTTGTTCCTGAGACTGCAATTGAAAATGGAACCGATACAATGTCTGGAGCGGTGTCTTCTGGCCACTGTCTAGAGGTTTCTATGAATAATGAGTTAAAACCGTCCACTTTAAGTGTTCGCAGGCGCTTGGCAAAATTGTCAGAAAATTCAGATATATTGATGGATACTGAAGTTCCAGATTCTTCTCAGAAAGATGCTCTACGAGATTTTCTAGATGAAAATATGGAAACTACAATTATCAAGGTGATGGATGAGTGCAGTCGTGTGGATTTCAAACTAAAGTCAACATTTGTTGAGTCCAGTCCATCATTGGAAACAGATGTGGTACAGAATTTGTGGGAAAAACTCCGACAAATGGATTTAAAACAGCATGCTATCTCAGAAAAGCTAGGTGTTTCTCAAGTTGTTAAACTTGCTAGTGGCTTGAGTAATCTAATTTCAGAAGCGGACTTGTTTCATAATTACCAACATAAACATGATATTTTAGAGCCCCGAAGTTTCGTTTCTAATGAAACTACAACTAGTTGGTACAATGATGAAACAATGATGTCCAGCGTTGCTGTGCATGGGTTTTGTTTTTATGTTAAACTTATAGCAGATGTTGGATCAAAGCTAGGTTGTGCGAATAAGATTGATTTAACTTCGGAGGTGTTAGCTTCCACAACTAATACTATGGCATTGGGGAAATTATCCAGACTGGATATTGCCAAAAACACAGTTATTTATACCGGGAAGGAGTTAGAGTTGAACAACCAAATGGAGAGTGAAAATAAAGCATCTCTGTTTGAGGTTGTCCAATCCATTGTTCCTGCAAGAATATCCTTAGCATTGAAAGGTGATATCTTCAATGAATATCTATCTTCATTGTGCCAAATTTCAAGGTCAGAAGCAGTCCGTGTTTCGCAAGGCGTTGAAAAGAAGAGAAGAGGAAGGTCGCGGGGTGCTCAACATTATTTGAGCAGATGCACAATGTTGTCTCCCGAAGATATAACGTTGGTCAGTGGTGATTTGTACAGGAAGATTTCCTCACAACATACAATTAATGTGGAAACGAGCCTGGATCCTCTTCTTCACATTACAAAGAGATGGATGCGAGACAATAGGGAATTGAAGGGTAAAAACGAGATCTAA 3756 0.4039 MAGPVTDLSPSDNPATPPVRNVRRRLVQSTLFPHKPPQPRNKPEENEESGDEQDEDYCDTKNRKKRKSKGKITPVNKGSKSATPKKNASGKKQSDGKTSIANAIMGSTSRNVLSDFDKVVIPKPDLRLEAKLSAEENSRMFAGRQVHPFFSSCKAGKKVQELSEPGSDAFKAKSGNGSITCGPIHVFENIKDDTSSLDWRNWTFLENSTYVNSGSESSNSSVLGASVECLNFDKLLSTLDPVGASSSQNASNSLDIFSTCPENMQETSLSNSTLPEEQTISAPMPKDGKVDLEVDESGTSSVEAGYFRKSHTGEPLSRFLQESLRSYYIGCEDKAEGSLWTYKYKPTKAVEVCGNDEAVNFLSDWLHQWHERRYKPRKDTSNRDTRVIQDDDDDYICSDSDYDSEDMNEDSLQNVLLVTGPIGSGKSAAIYACAQEHGFDILELNASDCRNGTVVKQYFGDTLGSHGFKRLSEHTVSSQKMTTKLPPAPALVNGKAADEVNDGVVELITISDDEACSPGEISQKLHGKNNVACDKVQTLILVEDVDILFPEDRGCIAAIQQIAETARGPIILTSNSDNPGLPDNFDRLQVSFSLPTPKELLCHLYSVCIREGASIHPLLLEKFIQSCDGDIRKTIMHLQFWLQSKIFKKDLKAHTGYVSLPFDLEVGHQILPKIMPWDFPSEISELIENEFVKSVNQMEDNSSLQGLVDEELLHINESQNDLDEQYMETDYIKAKKVEMIQRNGSITDYCELEIQCKAISEFSNSSGSPVASYLQNGRRKLVVMSSDSEEEDSNNGYPQDTGDGANKRHSIKGNNECTSEFQLNDNFPSTSVRKLVCSELEDSDDEHVKYSEAVDVTCINDTSQSFDISCVPESTFVPETAIENGTDTMSGAVSSGHCLEVSMNNELKPSTLSVRRRLAKLSENSDILMDTEVPDSSQKDALRDFLDENMETTIIKVMDECSRVDFKLKSTFVESSPSLETDVVQNLWEKLRQMDLKQHAISEKLGVSQVVKLASGLSNLISEADLFHNYQHKHDILEPRSFVSNETTTSWYNDETMMSSVAVHGFCFYVKLIADVGSKLGCANKIDLTSEVLASTTNTMALGKLSRLDIAKNTVIYTGKELELNNQMESENKASLFEVVQSIVPARISLALKGDIFNEYLSSLCQISRSEAVRVSQGVEKKRRGRSRGAQHYLSRCTMLSPEDITLVSGDLYRKISSQHTINVETSLDPLLHITKRWMRDNRELKGKNEI 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02175 1251 MobiDBLite consensus disorder prediction 74 98 - -
Trre5g02175 1251 MobiDBLite consensus disorder prediction 784 808 - -
Trre5g02175 1251 Gene3D - 337 590 IPR027417 -
Trre5g02175 1251 MobiDBLite consensus disorder prediction 266 291 - -
Trre5g02175 1251 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 597 658 - -
Trre5g02175 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 648 IPR027417 -
Trre5g02175 1251 MobiDBLite consensus disorder prediction 1 98 - -
Trre5g02175 1251 Gene3D - 595 658 - -
Trre5g02175 1251 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 10 1218 IPR004582 GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02175 Trre-Chr5 16357914 16367174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02175 340 640 Core DNA Replication Machinery Family AT5G22010 21.725 1.56e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02175 K26118 - gmx:100784209 1518.44