Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02163 ATGGATTGTTGTGTGTGCACAACTATGCCATTGATATTAAGGCCACCAAGGAATACAATATGTGGTGCATGTTATGAAGGTGTTAGGAGCATAATCAACATGATGAATAGTCTTGAAATTGAGAAAGCAAAAGCAATCACTAATCCAAATGGTTCTCCGGTTTCGCCGCGAAATTCGAGTAAGTCACTTGATGATTGTATAAGATTGTGTTCAGAACAAATAGACCAATTTAATCAACAAAAACAAGATTTGGCTTTTCTCAGAGGCTATGTTGATGCCTTCAAAGAGCAAATTCACACAGATATATTGATAAGTCCAGGCAATCATGGTCCACCTATACCTGCACATAAATCTGTTTTGGCTGCAAGATCAGAAATTTTTAAGAACATGCTAGAGTATGATGAATGTAAAGCTGCACCAACTTGTAACACAATAACAATACCTGATTTGAACCATGAAGAACTAGAATCACTTCTAGAGTTTCTCTATAGTGGGACATTACCATTGGAAAAATTGGAGAAACATGTATATGCTTTGTCACAAGCAGCTGATAAGTATATTATTCCACACTTGTTGAAATATTGTGAAAGATACTTATACAACTCACTTAGCACTTCTAATGCATTTGAGACATTAGAAATTGCTGACACTTGTTCAAACAACAATTTGAAGGAGACAACTTTTAATTTCTTAGTGAAAAATATTGAGCATATGGTTTCTTCTCCTAAATTTGAAGCTTTTGTGCATAGGAGTCCACATTTAACAGTGCAATTAGTTACAAGAGCATTTGTGAATGGTTCAAAATTAGTATTGTGA 816 0.3468 MDCCVCTTMPLILRPPRNTICGACYEGVRSIINMMNSLEIEKAKAITNPNGSPVSPRNSSKSLDDCIRLCSEQIDQFNQQKQDLAFLRGYVDAFKEQIHTDILISPGNHGPPIPAHKSVLAARSEIFKNMLEYDECKAAPTCNTITIPDLNHEELESLLEFLYSGTLPLEKLEKHVYALSQAADKYIIPHLLKYCERYLYNSLSTSNAFETLEIADTCSNNNLKETTFNFLVKNIEHMVSSPKFEAFVHRSPHLTVQLVTRAFVNGSKLVL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02163 271 ProSiteProfiles BTB domain profile. 100 171 IPR000210 GO:0005515
Trre5g02163 271 Gene3D Potassium Channel Kv1.1; Chain A 68 202 IPR011333 -
Trre5g02163 271 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 20 268 IPR044784 -
Trre5g02163 271 SMART BTB_4 100 203 IPR000210 GO:0005515
Trre5g02163 271 Gene3D - 203 268 - -
Trre5g02163 271 SUPERFAMILY POZ domain 85 201 IPR011333 -
Trre5g02163 271 Pfam BTB/POZ domain 94 202 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02163 Trre-Chr5 16234255 16235837 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre5g02163 BTB 1.7e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02163 K10523 - gmx:100777561 464.922