Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02160 ATGTCACCGTCCGCCGGAGCCCACGTCCCCCTATTAACCGGAACAACAAATTCTGCGGTGGAGCCTGGTTCAGTTCCCGGTGCTGTATTCAATGTTGCAACTACAATAATTGGCGCCGGAATCATGTCAATCCCGGCGATTCTAAAAGTTCTTGGAGTATTTCCCTCTTTTGCCTTAATTCTGATCGTCGCCGTGTTAGCCGAAGTTTCCGTCGAATTTCTCTTGCGTTTTACACATGCCGGTGAAACTACGACTTACTCCGGTGTCATGAGGGAAGCTTTTGGATCCTATGGAGCAATATCCGTTCAAGTTTGTGTCATAGTTACAAACTTTGGAGCTTTAATTCTCTATCTTATCATCATCGGGGATGTTCTATCTGGAAAGGAAAGTGGAGATGAAGTGCACTTGGGAATTTTGCAGCAGTGGTTTGGGATTCATTGGTGGAATTCAAGGGAAGTTGCTCTTCTCATCACCTTGGTTCTTGTTATGCTTCCTTTGGTCTTGTACAGACGTGTAGAGTCCTTGAAGTATAGTTCTGCAATATCAACTCTTCTTGCTGTGGCATTTGTTGCCATTTGTTCTGGCTTGGCTATTGTTGCTTTGGCACAAGGAAAAACACAAACTCCTAAATTAGTTCCTCGATTAGACTACCAAACATCATTCTTCGATTTGTTCACTGCAGTTCCCGTTGTAGTCACAGCATTCACATTTCATTTCAATGTGCATCCAATTGGGTTTGAGCTTGCAAATCCATCCGATATGAAAACCGCAGTTCGATTAGCAATAATGTTTTGTGCATTTATATACTTCACAATTGGTTTATTTGGCTACCTCTTATTCGGAGATTCAACACAATCAGACATTCTAATCAATTTTGATCAGAGTTCCGATTCTACCGTTGGTTCCTTGTGCAATAGTTTAATTCGAGTTAGCTATGCACTCCACATTATGCTAGTATTCCCTATTTTGAATTTCTCTTTAAGAGCCAACATTGATGAACTACTATTCCCTAAGAAGCCTCTACTAGCCACAGACAACAAGAGATTTGTAATTATCACTCTTTTGCTCTTAGTATTCTCCTATCTAGCTGCTATAGCAATTCCAGATATATGGTACTTCTTTCAGTTTCTAGGATCAACAACTGCACTATGCCTTGCCTTTATTTTCCCAGGCACTATTGCTTTAAGGGATGCTCTTGGCATATCAACAAGAAAAGACAAAATTATAGCACTGGTTATGATTATACTAGCTGTGGTGACAAGTGCAATTGCAATTTCTACCAACATATACAATGCTTTAAGTAGCAAGTCATAA 1314 0.4049 MSPSAGAHVPLLTGTTNSAVEPGSVPGAVFNVATTIIGAGIMSIPAILKVLGVFPSFALILIVAVLAEVSVEFLLRFTHAGETTTYSGVMREAFGSYGAISVQVCVIVTNFGALILYLIIIGDVLSGKESGDEVHLGILQQWFGIHWWNSREVALLITLVLVMLPLVLYRRVESLKYSSAISTLLAVAFVAICSGLAIVALAQGKTQTPKLVPRLDYQTSFFDLFTAVPVVVTAFTFHFNVHPIGFELANPSDMKTAVRLAIMFCAFIYFTIGLFGYLLFGDSTQSDILINFDQSSDSTVGSLCNSLIRVSYALHIMLVFPILNFSLRANIDELLFPKKPLLATDNKRFVIITLLLLVFSYLAAIAIPDIWYFFQFLGSTTALCLAFIFPGTIALRDALGISTRKDKIIALVMIILAVVTSAIAISTNIYNALSSKS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02160 437 Pfam Transmembrane amino acid transporter protein 23 423 IPR013057 -
Trre5g02160 437 PANTHER AMINO ACID TRANSPORTER 17 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02160 Trre-Chr5 16218722 16220998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02160 1 431 Amino Acid or Auxin Permease AAAP Family AT3G56200 58.237 5.35e-177 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02160 - - gmx:100815694 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02160 5 16218722 16220998 Trre5g02160 5 16218722 16220998 ECH
Trre5g02160 5 16218722 16220998 Trre9g04436 9 51992612 51993986 PCT
Trre9g04437 9 51996496 52000291 Trre5g02160 5 16218722 16220998 PCT