Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02137 ATGGCGCCTAGAAAAAGAAATTTGCATCAATGGAAGCATCCATTCAATGATGATTATCCATTTGAAGTAGTATTGAATGGCTCATGGCAACCGGTAGAACTCATAAAAATTGAGTCAGGAAAAACTACCTTACATTTCATGGATACTCAACAAATTCAGAGCCCTTTATCATCAGATATTCGTATAAAATCAAGAAAAGCTACTTCATCTGATTGCTCCAACTTTTTAAGACCTGGAATTGACATATCAATGCTATTAGGCTATTGCTACAAAGACAATCCAGATCAATTTGGTCCTATTCCAATGTGTATGGATGCAAGAATAAAATCTATACATAGACAACCTCACGAATCTGATCAATGTTCGTGTCAATTTTACGTAAACTTGTATGATGATCAAGGTTCACTCGGTACGGAGTTAAAAACTCTTGATAAAGAGGTTAATGCCATTGAAATAGGTCAAATTTTCATCCTCCAAAGGCTTCAACATAATACTTGTGACGACTTGTCGAAAAAGAATGACAATATTGAAGTTAAGCCTTATAGATGGGATTCATCAGAAGATTGTTCTTCACTGTCACAATCTAGATTACTCTTTGGGAAATTTTTATCCGATCTTTCGTGGTTTGTTACTACATCTTTTTTAAAGAAGGTTTCATTTCGGATAAGGTCTGCTCAAAACAAGATTGTGTATCAAGTTAAGGGAAATGATACCGATATTGTTAGTCCTTTTCTTATTGATGTCGTGAACTTCAAATCAGAAGAGGGATCAGTAGTTCCAATTGTTTCTGAATTTGACTTGTTTCATGATTATGATGATAAAGAAGATGAAGCGTCATCAGTTCCGTCTAATGAAATGGAAGACTTACGACGTTCGAAACGTAGGACTGTACAACCCGAACGTTATGTAGGTTTTGATGTTGAGAAGTTGGAGGTTGGAAATTTTCGAACATGGCCGTATAAGAGACCAAATTATGTTATAGATGATGAAAACTCTTCTTATGATTCCGAAGAGGATGATGAAAACTCTTCCAAAGATGATCATTTGAGTAAGAATGATGTTGATGAGTTGAATTTGGAACCCTGCAGTATTCAGACTACCATGTCAAATGATGCAGAAATTGATGATAGAGTTTCTTTGGGGGATTATTATAGTTTGAGAAAAGAGAAACTTAAGAGGAAGCGATTTCATGATTCAGATGATATCGATTTTGAAAGCAAATGGGAAGGGATACATTTCAAAAATGGAGCTCAAACAAAAAGATATCATTCCATTTTTACAAGCAGAGAACATGTTCATGATGAAAAAGATCATAAAGGCGGTAGATCGTTAAATGTTGATGCCTGTAAGGAAATGATAGATACTTATATGAAGAATTTTGATAGTCTACCAACTGATGAAGAGCCAACTATCAGGGAAGAAACAAGCAAGTTGGAGCAGAAGGTTGAAGAAAATGTATCGAAAATCGAGGATGAGGACGAAGATCCAGATGATTTGGCTGGCTTGTGGGAAGAAATGGATACAGCTTTGATATCAAGTAATCTTCTTGATGGAACTGAAGGTTCAAATGATGAGGTTTTAGCTGATTCCAAGAAAGAATCCACGGAGATTTGTGAACATGATTATAAATTGGATGAACAAATTGGAATATACTGCCTTCGATGCGGCTTTGTAAAAACCGAGATACGACACATTTCTGAACACATTATTGAAAGTCCAAGACGGTACAGAGAGGAGAAACAATGCATTGATGAAGAAAAGGAACATAAATCAGAGCAAATAGTTGATGAAGATGTCTATAATGATTTGTTCTCAACTCATGCTACTGATCCTGATGAACCAATATCTAAAGAAAATGAGAGTGTTTGGGAATTGATTCCAGAACTGAAAGAAAAAATGCATGCACACCAGAAAAAGGCTTTTGAATTTCTTTGGCAAAACATTGCAGGCTCTATCGAACCATCACTCATGAAAGAAAAATCCAAAACAAAAGGTGGTTGTGTTATATCACATGCTCCTGGAGCTGGAAAAACCTTTCTCATTATTTCTTTTCTTGTAAGTTACTTGAAGTTATTTCCTGGGAAGAGACCATTAGTCCTTGCTCCAAAAACCACACTCTACACATGGCGCAAAGAGTTCAAAAAATGGAAGGCTCCTGTACCGGTTTATCTTATCCACGGCCGTCACACTTGGAAAGGTTCGACGACACCAAAATCAATGGTTCTTCCTGGAGTTCCAAGACCTTCGAGTGATGTCAAACATGTTTTAGATTGTCTTAGCAAGATCCAAAAATGGAATTCACACCCTAGTGTTCTTGTTATGGGTTATACTTCATTTTTATCATTAATGAGATCAGAAGATACAAAATTTGCACACAGAAAATACATGGTTAAAGCATTGAAAGAAAGCCCTGGAATCTTGATACTTGATGAAGGACACAATCCTAGAAGTACTAAATCAAGATTGAGGAAATGTTTGATGAAACTTCCAACAGAATTGAGGATATTACTTTCTGGCACATTGTTTCAGAACAATTTCTGTGAATATTTCAACACACTTTGTTTAGCTAGACCGAAATTTGTCCATGAAGTTCTACACGAGTTGGATTCTAAATACCGAAGGAGAGGCAAAGTAGCCAAGAAAGCACGGCATTTGCTCGAGGCGCGGGCGCGGAAATTCTTCTTGGACAACATTGAAAAGAAAATTAACTCAGACATTGATGAGGAGAAGATGCAGGGTCTATATGTGCTGAGAAAAATTACTTCTGGTTTCATCGATGTTTATGATAGCGGAAATTCTTCTGATACTCTTCCTGGGTTACAAATCTATACATTGCTCATGAATACGTCCGATGAACAACATGAGATTGTACAGAAACTTCAGAAGAAAATGGCTGAGTGCACCGGTTACCCTCTTGAGGTTGAGCATTTGATATCACTCGCATCGATACATCCATGGTTGATCAAAACAGCAGCAACATGTGCAGCTAAGATTTTCGCCGAAGATGAATTGGAGAAACTAGAACCATTGAAGTTTGATTTGAGAAAAGGTTCCAAAGTGAGATTTGTTCTGAGCCTAGTGTCACGTGTAGTGAATAAGGAAAAGGTTCTTATCTTTTGTCACAACCTTGCACCAATGAGGTTTCTTATAGATTTATTTGAAAAGTATTTTCAGTGGCAAAATGGTAAAGAGATTCTGTTACTAACCGGTGAACTGGATTTATTTGAAAGAGGTAAAGTGATAGATAAATTCGAAGATTCCCGCGGAAGTTCGAAGATACTCCTTGCTTCAATCAATGCTTGTGCTGAAGGGATTAGTTTAACATCGGCTTCTAGAGTGATATTTTTGGACTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCGCGCGCTTTTCGTCCGGGTCAGCAGAAAATGGTTTATGTGTATCAGTTATTGACAACCGGGTCGATGGAGGAAGATAAGCATAGAAGAACTAGTTGGAAAGAGTGGATATCTTGCATGATTTTCAGTGAGAAATTTGTTGAAGATCCTTCTAAATGGCAAGCAGAGAAGATTGAAGATAATATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCATATGATTATGAAGAAAGAAAAGGACTCAACAAGCTAA 3651 0.3692 MAPRKRNLHQWKHPFNDDYPFEVVLNGSWQPVELIKIESGKTTLHFMDTQQIQSPLSSDIRIKSRKATSSDCSNFLRPGIDISMLLGYCYKDNPDQFGPIPMCMDARIKSIHRQPHESDQCSCQFYVNLYDDQGSLGTELKTLDKEVNAIEIGQIFILQRLQHNTCDDLSKKNDNIEVKPYRWDSSEDCSSLSQSRLLFGKFLSDLSWFVTTSFLKKVSFRIRSAQNKIVYQVKGNDTDIVSPFLIDVVNFKSEEGSVVPIVSEFDLFHDYDDKEDEASSVPSNEMEDLRRSKRRTVQPERYVGFDVEKLEVGNFRTWPYKRPNYVIDDENSSYDSEEDDENSSKDDHLSKNDVDELNLEPCSIQTTMSNDAEIDDRVSLGDYYSLRKEKLKRKRFHDSDDIDFESKWEGIHFKNGAQTKRYHSIFTSREHVHDEKDHKGGRSLNVDACKEMIDTYMKNFDSLPTDEEPTIREETSKLEQKVEENVSKIEDEDEDPDDLAGLWEEMDTALISSNLLDGTEGSNDEVLADSKKESTEICEHDYKLDEQIGIYCLRCGFVKTEIRHISEHIIESPRRYREEKQCIDEEKEHKSEQIVDEDVYNDLFSTHATDPDEPISKENESVWELIPELKEKMHAHQKKAFEFLWQNIAGSIEPSLMKEKSKTKGGCVISHAPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKAPVPVYLIHGRHTWKGSTTPKSMVLPGVPRPSSDVKHVLDCLSKIQKWNSHPSVLVMGYTSFLSLMRSEDTKFAHRKYMVKALKESPGILILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLHELDSKYRRRGKVAKKARHLLEARARKFFLDNIEKKINSDIDEEKMQGLYVLRKITSGFIDVYDSGNSSDTLPGLQIYTLLMNTSDEQHEIVQKLQKKMAECTGYPLEVEHLISLASIHPWLIKTAATCAAKIFAEDELEKLEPLKFDLRKGSKVRFVLSLVSRVVNKEKVLIFCHNLAPMRFLIDLFEKYFQWQNGKEILLLTGELDLFERGKVIDKFEDSRGSSKILLASINACAEGISLTSASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKHRRTSWKEWISCMIFSEKFVEDPSKWQAEKIEDNILREMVEEDKSKAIHMIMKKEKDSTS 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02137 1216 MobiDBLite consensus disorder prediction 327 353 - -
Trre5g02137 1216 Pfam SNF2-related domain 637 914 IPR000330 GO:0005524|GO:0140658
Trre5g02137 1216 MobiDBLite consensus disorder prediction 460 496 - -
Trre5g02137 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 935 1201 IPR027417 -
Trre5g02137 1216 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1022 1188 IPR001650 -
Trre5g02137 1216 MobiDBLite consensus disorder prediction 465 487 - -
Trre5g02137 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 861 IPR027417 -
Trre5g02137 1216 Gene3D - 938 1216 IPR027417 -
Trre5g02137 1216 CDD SF2_C_SNF 1018 1147 - -
Trre5g02137 1216 Gene3D - 604 901 IPR038718 -
Trre5g02137 1216 SMART ultradead3 629 867 IPR014001 -
Trre5g02137 1216 Pfam Helicase conserved C-terminal domain 1019 1135 IPR001650 -
Trre5g02137 1216 Coils Coil 472 492 - -
Trre5g02137 1216 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 57 1215 IPR044567 GO:0080188
Trre5g02137 1216 SMART helicmild6 1051 1136 IPR001650 -
Trre5g02137 1216 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 658 859 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02137 Trre-Chr5 16000948 16005531 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02137 1049 1154 RAD5 or RAD16-like Gene Family AT5G43530 35.849 5.90e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre5g02137 SNF2_N 4.5e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02137 K10875 - jre:108991882 1263.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02137 5 16000948 16005531 Trre5g02137 5 16000948 16005531 ECH
Trre5g02137 5 16000948 16005531 Trre9g04406 9 51779320 51783963 PCT