Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02136 ATGGCGCCTAGAAAAAGGAATTTGCTTCAACAGAAGCATCCATTTAATGATGATTATCCATTTGAAGCAGTATTGAATGGCTCATGGCAACCTGTAGAACTCATAAAAATTGAGTCTGGAAAAACTTCCATAAAATTCATGGACACTGAACAATTTCAGAGCCCTTTATCGTCAAACATTCGTGTAAAATCAAGAAAAGCTACTGCATATGATTGCTCCGGCTTTTTAAGACCTGGAATTGACATAGCAATGCTGCTAGGGTACTGCTACAATGATAATCCAGATCAATTTGGTCCTATTCCAATGTGTATGGATGCAAGAATAACTTCTATTCAAAGACAACCTCACGAATCCGATCAATGTTCATGTCAATTTTACGTAAATTTGTATGATGATCAAGGTTCACTTGGTACAGAGTTAAAGACTCTTGATAAAGAGGTTAATGCCATTGGAATAGATCAAATTTTCATCCTCCAAAGGCTTCAACATAATATCTATGAAGCCTTGTTGAAAAAGAATGACAGTTCTGAATCTGAAGTTAAGCCTTATAGATGGGATTCATCAGAAGATTGTTCTTCACTATCACAATCTAGATTACTCTCTGGGAAATTTTTATCCGATCTTTCGTGGTTTGTTACTACATCTTGTTTAAAGAAGGTTTCATTTCGGATAAGGTCTGCTCAAAACAAGATTGTGTATCAAGTTAAGGGAAATGATACTGATATTGTTAGTCCTTTTCTTATCGATGTCGTGAATTTCAAATCAAAAGAGGGATCAGTAGTTCCAATTGTTTCTGAATTTGACTTGTTTCATGATTATGATGGTAAAGAAGATGAAGCGTCATCAGTTCCGTCTAATGAAATGGAAGGCTTACGACGTTCGAAACGTAGGACTGTACAACCCGAACGTTATGTAGGTTTTGATGTTGAGAAGTTGGAGGTTGGAAATTTTAGAACGTGGCCGTATAAGAGATCATCATATGTGATAGATGATGAAAAATCTTCATCAGATTCAGAAGAGGATGATGTAAACAATGTAGAAGTTGATGATAGAGTTTCTTTGGCGGATTATTATAGTTTCGGAAAAGAAAAGCCTAAGAGGATGCGATTTAATGGTTCAGATGATATCGATTTTGAAGGAAAAATGGAAGGGATACATTGCAAAAAAGGAGCTCAAACAAAAAGATACAATTCCATTTTTACTAGTAGACATAATGTTCATGAAGAACAAGATCATAAAGGTGGTAGATCGTTAAATGCTGATGCGCGCAAGGAAATGATCGATACTTACATGAAGAATTATGATAGTCTACCAACTGAAGAAGAGTTAACTATCAATGAAGAAACAAGTAAGTTGGAGCAGAAGGAGGAAGAAAATGTATCAAAAAGTGTTGACGAGGAAGAAAATCATGATGATTTGTGGGCAGAAATGGAAACAGCTTTGATATCAAGTAATCTTCTTGATGGAACTGAGGGTTCGAATGCTGAGGTTTTAGCTGAATCTGATAAAGAATCCACGAAAATTTGTGAACATGATTATATAACGGATGAACAAATTGGAATATACTGCCTTCGATGCGGCTTTGTGAAAACCGAGATACGACACATTTCTGAACAAATTATTGAAAGTCCAAGACGGTACAGAAAGGAGAAACAATGCATTGAAGGAGATAAGGAAAATATATCAGAGCAAAAAGATGTTAGTAATGATTTGTTCTCAACTCATGCTACTGGTCCTGATGAGCCAATATCTAAAGAAAATGAGAGTGTTTGGGAATTGATTCCAGAACTGAAAGAAAAAATGCATGCACACCAGAAAAAGGCTTTTGAATTTCTTTGGCAAAACATTGCTGGCTCTATGGAACCATCACTCATGAAAGAAAAATCCAAAACAAATGGTGGTTGTGTTATATCACATGCTCCTGGAGCTGGAAAAACCTTTCTCATTATTTCTTTTCTTGTAAGTTACTTGAAGTTATTTCCTGGGAAGAGACCATTAGTCCTTGCTCCCAAAACCACACTCTACACGTGGCGCAAAGAGTTCAAAAAATGGAAGGCTTCTGTACCGGTGTATCTTATCCACGGCTGTCGAACTAGGAAAGGTTCGATGACACCAAAATCAATGGTTCTTCCTGGAGTTCCAAGACCTTCTGGTGATGTCAAACATGTTTTGGATTGTCTTAGCAAGATCCAAAAATGGAATTCGCACTCTAGTGTTCTTATTATGGGTTATAGTTCCTTTTTATCTCTAATGAGATCGGAAGATTCTAAATTTGCTCACAGAAAATACATGGTGAAAGCATTGAAAGAGAGCGCTGGAATCATAATACTTGATGAAGGACACAATCCTAGAAGCAATAAATCAAGATTGAGGAAATCTTTGATGAAAGTTTCAACGGAATTGAGAATATTGCTCTCTGGCACGTTGTTTCAGAACAATTTCTCTGAATATTTCAACACGCTTTGCTTAGCAAGACCGAAATTTGTCCATGAAGTTCTACAAGAGTTGGATTCTAAATACCAAAGGAGAGGCAAAGTGGCGAAGAAAGACCCGCATTTGCTCGAGGCGCGGGCGAGGAAATTCTTCTTGGACAACATTGAAAGGAAAATTAACTCAGACATTATTGAGGAGAAGATGGAGGGTCTACATGTGCTGAGAAAAATTACTTCTGGTTTCATCGATGTTTATGATAGCGGAAATTCTTCTGATACTCTTCCTGGGTTACAAATCTATACATTGCTCATGAATACGTCCGATGAACAACATGAGATTGTACAGAAACTTCAGAAGAAAATGGCTGAGTGCACCGGTTACCCTCTTGAGGTTGAGCATTTGATATCACTCGCATCGATACATCCATGGTTGATCAAAACAGCAGCAACATGTGCAGCTAAGATTTTCGCCGAAGATGAATTGGAGAAACTAGAACCATTGAAGTTTGATTTGAGAAAAGGTTCCAAAGTGAGATTTGTTCTGAGCCTAGTGTCACGTGTAGTGAATAAGGAAAAGGTTCTTATCTTTTGTCACAACCTTGCACCAATGAGGTTTCTTATAGATTTATTTGAAAAGTATTTTCAGTGGCAAAATGGTAAAGAGATTCTGTTACTAACCGGTGAACTGGATTTATTTGAAAGAGGTAAAGTGATAGATAAATTCGAAGATTCCCGCGGAAGTTCGAAGATACTCCTTGCTTCAATCAATGCTTGTGCTGAAGGGATTAGTTTAACATCGGCTTCTAGAGTGATATTTTTGGACTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCGCGCGCTTTTCGTCCGGGTCAGCAGAAAATGGTTTATGTGTATCAGTTATTGACAACCGGGTCGATGGAGGAAGATAAGCATAGAAGAACTAGTTGGAAAGAGTGGATATCTTGCATGATTTTCAGTGAGAAATTTGTTGAAGATCCTTCTAATTGGCAAGCAGAGAAGATTGAAGATAATATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCATATGATTATGAAGAATGAAAAAGCTTCAACAAGCTAA 3555 0.3722 MAPRKRNLLQQKHPFNDDYPFEAVLNGSWQPVELIKIESGKTSIKFMDTEQFQSPLSSNIRVKSRKATAYDCSGFLRPGIDIAMLLGYCYNDNPDQFGPIPMCMDARITSIQRQPHESDQCSCQFYVNLYDDQGSLGTELKTLDKEVNAIGIDQIFILQRLQHNIYEALLKKNDSSESEVKPYRWDSSEDCSSLSQSRLLSGKFLSDLSWFVTTSCLKKVSFRIRSAQNKIVYQVKGNDTDIVSPFLIDVVNFKSKEGSVVPIVSEFDLFHDYDGKEDEASSVPSNEMEGLRRSKRRTVQPERYVGFDVEKLEVGNFRTWPYKRSSYVIDDEKSSSDSEEDDVNNVEVDDRVSLADYYSFGKEKPKRMRFNGSDDIDFEGKMEGIHCKKGAQTKRYNSIFTSRHNVHEEQDHKGGRSLNADARKEMIDTYMKNYDSLPTEEELTINEETSKLEQKEEENVSKSVDEEENHDDLWAEMETALISSNLLDGTEGSNAEVLAESDKESTKICEHDYITDEQIGIYCLRCGFVKTEIRHISEQIIESPRRYRKEKQCIEGDKENISEQKDVSNDLFSTHATGPDEPISKENESVWELIPELKEKMHAHQKKAFEFLWQNIAGSMEPSLMKEKSKTNGGCVISHAPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKASVPVYLIHGCRTRKGSMTPKSMVLPGVPRPSGDVKHVLDCLSKIQKWNSHSSVLIMGYSSFLSLMRSEDSKFAHRKYMVKALKESAGIIILDEGHNPRSNKSRLRKSLMKVSTELRILLSGTLFQNNFSEYFNTLCLARPKFVHEVLQELDSKYQRRGKVAKKDPHLLEARARKFFLDNIERKINSDIIEEKMEGLHVLRKITSGFIDVYDSGNSSDTLPGLQIYTLLMNTSDEQHEIVQKLQKKMAECTGYPLEVEHLISLASIHPWLIKTAATCAAKIFAEDELEKLEPLKFDLRKGSKVRFVLSLVSRVVNKEKVLIFCHNLAPMRFLIDLFEKYFQWQNGKEILLLTGELDLFERGKVIDKFEDSRGSSKILLASINACAEGISLTSASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKHRRTSWKEWISCMIFSEKFVEDPSNWQAEKIEDNILREMVEEDKSKAIHMIMKNEKASTS 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02136 1184 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 626 827 IPR014001 -
Trre5g02136 1184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 903 1169 IPR027417 -
Trre5g02136 1184 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 990 1156 IPR001650 -
Trre5g02136 1184 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 57 1183 IPR044567 GO:0080188
Trre5g02136 1184 Pfam Helicase conserved C-terminal domain 987 1103 IPR001650 -
Trre5g02136 1184 CDD SF2_C_SNF 986 1115 - -
Trre5g02136 1184 MobiDBLite consensus disorder prediction 445 467 - -
Trre5g02136 1184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 588 829 IPR027417 -
Trre5g02136 1184 SMART helicmild6 1019 1104 IPR001650 -
Trre5g02136 1184 Gene3D - 906 1184 IPR027417 -
Trre5g02136 1184 Coils Coil 1181 1184 - -
Trre5g02136 1184 Gene3D - 574 867 IPR038718 -
Trre5g02136 1184 SMART ultradead3 597 835 IPR014001 -
Trre5g02136 1184 Pfam SNF2-related domain 606 898 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02136 Trre-Chr5 15988911 15994923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02136 1017 1122 RAD5 or RAD16-like Gene Family AT5G43530 35.849 5.61e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre5g02136 SNF2_N 6.3e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02136 K10875 - egr:104421037 1112.83