Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02131 ATGGATTCCGAGTTTCCTAACAAAGCATTAACCTCCACCCGTTTTTCCGAGCTCAAACCACCACTATCCGATCCAGTTCTTCAAGCCCTCACAGACTCCGGCTTCGATTTCTGCACTCCCGTTCAAGCCGCCACCATTCCTTTACTCTGTAGCTTCAAAGACGTCGCCGTCGACGCTGCCACTGGTTCAGGAAAAACCCTAGCATTCGTCATTCCACTTGTTGAAATTCTTCGCCGCAACTCTTCCAATCCCAAACCTCACCAGGTATTGGGAATAATTATATCTCCTACAAGGGAACTAGCATCCCAAATATATCATGTTGCACAGCCTTTTATATCAAGTTTAACGAATGTTAAGTCGATGCTACTCGTCGGCGGAGTGGAAGTAAAAACTGACATGAAGAAAATTGAGGAAGAAGGAGCTAACATATTGATCGCCACGCCTGGTCGATTACACGACATAATGAATAGGATGGATGTTATGGATTTCAAAAGCTTTGAGATTTTGATTTTGGACGAGGCTGATAGACTATTAGATATGGGATTCCAGAAGCAGATAAATGCTATCATAACTCAGTTGCCTAAGCTTCGAAGAACTGGCTTATTCTCTGCCACTCAAACTCAGGCTGTGGAAGAGCTTGCCAAAGCAGGATTGAGGAACCCTGTTAGGGTTGAAGTTCGAGCCGAAACAAAAAGAATGAATGATTCTGCTGCATCAAAGCATCCAGAATCTTCAAAGATACCTTCAGGTCTTCACATTGAGTACATGGAATGTGAGGCAGATAAGAAACCATCACAGCTGGTAGATTTCCTTGTTAAGAACCGTTCAAAAAAAATTATAATATATTATATGACTTGTGCTTGTGTTGACTATTGGGGAGTTGTTCTTCCACGCCTTTCTGTTTTGAAAGGCTTCTCCTTGATCCCCCTTCATGGAAAGATGAAGCAGACTGTCAGGGAGAAGGCACTAACTTCTTTTACATCACTTTCAAATGGAATTCTTCTGTGTACGGATGTTGCAGCACGTGGACTTGACATACCTGGTGTAGACTGTATAGTGCAGTATGATCCTCCTCAAGACCCAAATGTTTTCGTACATCGGTCTGGTCGAACTGCTCGGCTGGGTAAACAAGGACATGCTGTGGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAGGAGTTCCTCTTCAAGAGAGAACATGCTCCGACAATGCACCTGATGTTGTACCTGAGATTCGTTCTGCGGCAACAAAAGATCGTGATGTCATGGAGAAGGGAGTCAGGGCATTTGTTTCTTACATTCGTGCTTATAAAGAGCATCACTGCTCGTATATTTTCAGGTGGAAAGAACTTGAAATTGGCAAATTAGCTACCGGACATGGCTTATTGCAACTTCCTTTAGTGCCGGAGGTAAAACGCCACTCACTATCCACTGAGGGATTTGAACCGGTTAAAGATATCAATTTCGAGGACATTAAGTTCAGGGATAAATCAAGGGAGAAGCAACGGAAGAAAAACCTGCTAGTAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTAAAAAACTAAAGAAAACTCCAAATGTGCCTATTGCCATGAGGAAGAAAACAGCCAAACAGAGACGTGCTCAGCAGACAGTTGAAGATGAGGAAGAGTTGACGCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGACCATAGATGAGAATGAATATGCCAAGTTGACAGGCACTGAGGATTTACTTTGA 1770 0.4277 MDSEFPNKALTSTRFSELKPPLSDPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVIPLVEILRRNSSNPKPHQVLGIIISPTRELASQIYHVAQPFISSLTNVKSMLLVGGVEVKTDMKKIEEEGANILIATPGRLHDIMNRMDVMDFKSFEILILDEADRLLDMGFQKQINAIITQLPKLRRTGLFSATQTQAVEELAKAGLRNPVRVEVRAETKRMNDSAASKHPESSKIPSGLHIEYMECEADKKPSQLVDFLVKNRSKKIIIYYMTCACVDYWGVVLPRLSVLKGFSLIPLHGKMKQTVREKALTSFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRSGRTARLGKQGHAVVFLLPKEESYVEFLRIRGVPLQERTCSDNAPDVVPEIRSAATKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLATGHGLLQLPLVPEVKRHSLSTEGFEPVKDINFEDIKFRDKSREKQRKKNLLVKKEAKEKEPKPKKLKKTPNVPIAMRKKTAKQRRAQQTVEDEEELTQEYRLLKKLKKGTIDENEYAKLTGTEDLL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02131 589 MobiDBLite consensus disorder prediction 516 530 - -
Trre5g02131 589 Coils Coil 503 523 - -
Trre5g02131 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Trre5g02131 589 MobiDBLite consensus disorder prediction 516 557 - -
Trre5g02131 589 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Trre5g02131 589 CDD DEADc_DDX55 26 224 - -
Trre5g02131 589 PANTHER RNA HELICASE 11 520 - -
Trre5g02131 589 Gene3D - 3 227 IPR027417 -
Trre5g02131 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Trre5g02131 589 SMART helicmild6 290 375 IPR001650 -
Trre5g02131 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 419 IPR001650 -
Trre5g02131 589 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Trre5g02131 589 FunFam RNA helicase 9 227 - -
Trre5g02131 589 CDD SF2_C_DEAD 254 384 - -
Trre5g02131 589 SMART ultradead3 34 254 IPR014001 -
Trre5g02131 589 Gene3D - 253 480 IPR027417 -
Trre5g02131 589 Pfam Domain of unknown function (DUF4217) 416 472 IPR025313 -
Trre5g02131 589 Coils Coil 539 559 - -
Trre5g02131 589 SMART DUF4217_3 413 476 IPR025313 -
Trre5g02131 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Trre5g02131 589 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02131 Trre-Chr5 15904980 15910016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02131 17 389 Eukaryotic Initiation Factors Gene Family AT1G72730 28.075 9.46e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02131 K14809 - gmx:100801482 988.793