Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02127 ATGGGTGGTAATACTAATTCCCCTTGTGCTTCATGCAAACTCCTTAGACGCCGTTGTGCTAAGGATTGTATATTTTCTCCTTATTTCCCTTCAAATGATCCTAAAAAATTTGCTATAGTCCACAAAGTTTTTGGTGCCAGCAACGTTAGCAAAATGCTCCAGGAACTTCCCATTGAACAAAGATCAGATGCAGTAAGCAGTTTAGTGTATGAAGCACATGCAAGAGTTAAAGATCCTGTTTATGGTTGTGTTGGAGCCATTTCTTACCTTCAAAACCAAGTTTCTGAGCTTCAAATGCAGCTTGCAGTAGCTCAAGCAGAGATACTATGCATCCAGATGCAACATGATGAGCCTGTAATGCAAAATCCCAATATTGCCCTTGATCAAAAACCTTCTTATCTTCTCCAAAATGATCTTCCTCAGTACCTCAACTTTCCATCTTCAAGCAATGTAATTCATTATGATTCTCTCTCAAGAGAGAGCATTTTCTGA 492 0.3902 MGGNTNSPCASCKLLRRRCAKDCIFSPYFPSNDPKKFAIVHKVFGASNVSKMLQELPIEQRSDAVSSLVYEAHARVKDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHDEPVMQNPNIALDQKPSYLLQNDLPQYLNFPSSSNVIHYDSLSRESIF 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02127 163 Coils Coil 87 107 - -
Trre5g02127 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 122 - -
Trre5g02127 163 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Trre5g02127 163 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02127 Trre-Chr5 15875533 15876350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02127 1 135 AS2 family AT2G30130 78.102 3.04e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre5g02127 LOB 9.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02127 - - pop:7462094 265.003