Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02115 ATGTTTTCTACAAAGGCTCTGGCAGGATATGCGACACTTTTACAGTGTTGGATTCACGAGCATTTTCCTAGCCTTGTGCCGGAAAAACAGAGAGAAGATACTGTGAATTCTTTAGCTTATGAAGCAGAGGCAAGGCTTAGAGACCCGGTTTATGGATGCATTGGTTCAATAGCTTTGTTGCAAAGGAAAATGATGGAACTTCAACATGATTTGGCCATTGCTAAGGATCGTCTTGCTCGTTGTCGCGCTGTTGCTGCTGCTACAACCGCTGCCACAACTCCTTTTGTTGATAGTTTGCATTCTCATGTTAGTTTGCCTCCATTTCCTGAGTTTTACACTTCTAATGATCTCAATGATATCTTCTGCCATGGCTCTTCTTCGCAATTATCGGGTCAAAATGAAACAGCGGATGATTTCAATCAAATTCCATATATATTTTGA 441 0.4127 MFSTKALAGYATLLQCWIHEHFPSLVPEKQREDTVNSLAYEAEARLRDPVYGCIGSIALLQRKMMELQHDLAIAKDRLARCRAVAAATTAATTPFVDSLHSHVSLPPFPEFYTSNDLNDIFCHGSSSQLSGQNETADDFNQIPYIF 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02115 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 26 102 - -
Trre5g02115 146 ProSiteProfiles LOB domain profile. 1 78 IPR004883 -
Trre5g02115 146 Pfam Lateral organ boundaries (LOB) domain 26 75 IPR004883 -
Trre5g02115 146 Coils Coil 57 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02115 Trre-Chr5 15774700 15778642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02115 26 111 AS2 family AT3G11090 54.545 4.60e-26 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre5g02115 LOB 5.6e-13 No_clan