Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02110 ATGTCAAACTCTAATTCCCGATCATTAAACTGGCACTACACAGAGCTAGATGATAGAGATCTTGAAATCAGAGGCAGAACACTCTTCTTTATAATTGTACTCTTCTCTATTCTCCTTCTTGTTATTGTTCTCTTTTTCTACACTCGCTGGGTTTGCCGCTATCATTCCCGTATAACAACCACAACTCTCTCCGCCTCCATTCACGCGCCGCCACCTGCACAACCGCAAGGACTTGACCCTGTTTCAATAAAGAAACTGCCTATTATTCTTCATCAAGCTCCAACTGACCCAGAAAACGGCGCGTGGGAAGACACTGAGTGCTGTATTTGTCTTGGAGAGTTTAGAGACGGTGAGAAAGTGAAGGTTTTGCCAGGGTGTGAACATTATTTTCATTGTGATTGTGTTGATAAGTGGTTAACTTGTCAATCTAGTTGTCCACTTTGTAGAGGTTCTCTCAAAATTGAATCTTCTTTTCCTGAGATTTTGATTCAAGAACCACCAATTAGAATTGATATCCAATTATAG 525 0.4095 MSNSNSRSLNWHYTELDDRDLEIRGRTLFFIIVLFSILLLVIVLFFYTRWVCRYHSRITTTTLSASIHAPPPAQPQGLDPVSIKKLPIILHQAPTDPENGAWEDTECCICLGEFRDGEKVKVLPGCEHYFHCDCVDKWLTCQSSCPLCRGSLKIESSFPEILIQEPPIRIDIQL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02110 174 Pfam Ring finger domain 106 149 IPR001841 -
Trre5g02110 174 SUPERFAMILY RING/U-box 101 155 - -
Trre5g02110 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Trre5g02110 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
Trre5g02110 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 156 - -
Trre5g02110 174 SMART ring_2 107 148 IPR001841 -
Trre5g02110 174 FunFam RING-H2 finger protein ATL66 70 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02110 Trre-Chr5 15732778 15733302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02110 9 157 C3H Transcription Factor Family AT3G11110 42.208 4.10e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02110 - - gmx:100803278 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02110 5 15732778 15733302 Trre9g04376 9 51574715 51575245 PCT