Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02109 ATGAGGAAAAAAAGTATTCCATCTCGTTCTTTTCATAATCCATGTTCTTCTTTACAAGGTTTAACAAGAATGTTTAAATGTGATTTGTGTGACAAAAGCTTCGGCTCCGGCAAAGCACTCGGTGGCCACAAAACTTCTCACCGCTCGCAAAACCTTCTTCAGTCACTAATCAAGAAACATAAGAGAAATAGAAACATCAATAAGGCTATCACCGTTAATATCACTTAG 228 0.3728 MRKKSIPSRSFHNPCSSLQGLTRMFKCDLCDKSFGSGKALGGHKTSHRSQNLLQSLIKKHKRNRNINKAITVNIT 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02109 75 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 52 IPR013087 -
Trre5g02109 75 Pfam C2H2-type zinc finger 25 50 - -
Trre5g02109 75 SUPERFAMILY beta-beta-alpha zinc fingers 23 52 IPR036236 -
Trre5g02109 75 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Trre5g02109 75 Gene3D Classic Zinc Finger 5 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02109 Trre-Chr5 15712917 15713144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02109 14 56 C2H2 Transcription Factor Family AT1G27730 51.163 3.00e-07 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre5g02109 zf-C2H2_6 1.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02109 - - tpra:123891323 70.0922