Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02108 ATGGAAAACTACAACAATGATTCTTCTGAGTGGCAGCAACAACAACAGCATAAGCATTGGTCTCAATATAGTACTAGTGATGATCATTCACACTTTCCAACACAAATTCTTCCTCATAATAATATTTCTGATTCTTCTTCTGCTTCTTTTCAATATTCTGAGTTTCAATCATCATGGCCTTTACCTATTGAAGAAAGTTTAGAAGATAGAGCAATAAGTGCTTCTAAGAGTCATAGTCAAGCAGAGAAAAGACGCAGAGATAGGATTAATACTCAACTTGCTAATCTTAGAAAACTTATTCCTAAGTCTGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGATCGAGTCAAAGATCTAAAGCGAAAAGCGATGGATGTTAGCAGAGTCATAACAGTTCCAACTGAAATTGATGAAGTATCAATAGACTACAACCATGTTGAAGATGAAACCAACAATAACAAACTGAACAAATTCAAAAACAATTTCATCATCAAAGCTTCTGTTTGTTGCGACGATCGACCAGAGCTGTTCTCTGAACTAATCCAAGTCCTCAAAGGTTTAAGACTTACAACAGTTAAAGCTGACATAGCAAGTGTTGGTGGAAGGATCAAAAGTATATTAATACTTTGTTCTAAGGATAGTGAAGAAAATGTTTGCATTAATACTCTTAAACAATCCCTTAAATCAGCTGTGACAAAAATTGCTTCATCATCAATGGTATCTAATTGTCCTACTAGAAGTAAGAGGCAGAGGTTTTTCTTGCCTTCACATTTTGTATAG 789 0.3511 MENYNNDSSEWQQQQQHKHWSQYSTSDDHSHFPTQILPHNNISDSSSASFQYSEFQSSWPLPIEESLEDRAISASKSHSQAEKRRRDRINTQLANLRKLIPKSDKMDKAALLGSVIDRVKDLKRKAMDVSRVITVPTEIDEVSIDYNHVEDETNNNKLNKFKNNFIIKASVCCDDRPELFSELIQVLKGLRLTTVKADIASVGGRIKSILILCSKDSEENVCINTLKQSLKSAVTKIASSSMVSNCPTRSKRQRFFLPSHFV 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02108 262 Gene3D - 68 130 IPR036638 GO:0046983
Trre5g02108 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 126 IPR036638 GO:0046983
Trre5g02108 262 SMART finulus 79 128 IPR011598 GO:0046983
Trre5g02108 262 CDD ACT_UUR-ACR-like 170 205 - -
Trre5g02108 262 PANTHER TRANSCRIPTION FACTOR BHLH30 6 258 IPR045847 GO:0003700|GO:0006355
Trre5g02108 262 CDD bHLH_AtAIG1_like 68 145 - -
Trre5g02108 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Trre5g02108 262 MobiDBLite consensus disorder prediction 1 40 - -
Trre5g02108 262 Pfam Helix-loop-helix DNA-binding domain 76 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02108 Trre-Chr5 15707065 15708631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02108 49 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 47.059 4.49e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre5g02108 HLH 8.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02108 - - gmx:100799687 348.591