Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02104 ATGAGTAAGCTTCAGAGTGATGCAGTGAGAGAAGCTATCACTGGAATCATGACTGATTCCAAGGATAAGAACCGTAAGTTTGTGGAGACTATTGAACTTCAAATTGGGCTTAAGAACTATGACCCACAAAAAGATAAGCGTTTCAGTGGCTCTGTTAAGTTGCCCCATATCCCTCGTCCTAAGATGAAGATTTGTATGCTTGGAGATGCTCAACATGTTGAAGAGGCTGAGAAGATAGGTTTGGAATCCATGGATGTTGAAGCCTTGAAGAAGCTTAACAAAAACAAGAAGTTGGTGAAGAAGCTAGCCAAGAAGTATCATGCCTTCTTAGCTTCTGAGGCTGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGAAAGTTCCCAACACTTGTCTCTCACCAAGAATCTCTTGAGGCAAAGGTTAATGAGACAAAGGCTATGGTGAAGTTTCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCCGTGGGAAATGTTAGCATGGATGAAAAGCAAATCTTCCAAAATGTTCAACTGAGCGTTAACTTCCTTGTCTCCTTGTTGAAAAAGAACTGGCAGAATGTTCGGTGCCTGTATCTGAAGAGTTCCATGGGAAAATCCTACCGTGTCTTTTAG 636 0.4245 MSKLQSDAVREAITGIMTDSKDKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSSMGKSYRVF 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02104 211 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 211 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Trre5g02104 211 FunFam Ribosomal protein 65 149 - -
Trre5g02104 211 CDD Ribosomal_L1 9 210 IPR028364 -
Trre5g02104 211 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 11 205 - -
Trre5g02104 211 Pfam Ribosomal protein L1p/L10e family 23 205 IPR028364 -
Trre5g02104 211 SUPERFAMILY Ribosomal protein L1 22 211 IPR023674 -
Trre5g02104 211 FunFam Ribosomal protein L10a 1 119 - -
Trre5g02104 211 Gene3D - 131 209 - -
Trre5g02104 211 Gene3D - 1 119 - -
Trre5g02104 211 FunFam Ribosomal protein 132 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02104 Trre-Chr5 15675557 15677674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02104 1 211 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 87.037 1.46e-123 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02104 K02865 - gmx:100305550 374.785