Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02099 ATGGAAAATAACTTCAAATTAACCTCAGTTTTACTTGAATTATCAGCAACAGATGATATTGAAGCTTTCAAAAAGGAAGTGGAAGAAAAGGGTTGTGATGTAAATGAAGCTGGGTTTTGGTATTGTAGAAAATTAGGATCTAAGAAGATGTGTTATGAAAAGAGAACACCTCTTATGGTTGCTTCTTTGTTTGGAAGTAAAAGGGTTGTCAAATATATCATTCAATCAAACATGGTTGATGTAAGCATGCCAATTGGTTGTGAAAATGTCACTGCTTTACATTGTGCTGTTTCTGGTGGCTCTGAATCAACTCTTGAGATTGTTAAGCTCTTGGTTGATGCTGGAGCTCATATTGATTGTCTTGATGACATAATTAAGCAGAAGTTATTGGTGGCTAATCCTAAAGAATTATTAGGAGGTGAGAAGAAAGAATATGCTGTTGATATATCTTTGCCTGATATAAATGACGGTGTTTTCGGAACAGATGAATTTAGAATGTATAGTTTCAAGGTGAAGACTTGTTCAAGGGGTTACTCTCATGATTGGACTGTTTGTCCATTTGTTCATCCAGGGGAGAATGCTAGAAGGAGGGACCCAAGAAAGTATCCTTATAGCTGTGTTCCGTGCCCCGAGTTTCGCAAAGGGACATGCCAAAAGAAAGATGCATGTGAGTATTCACATGGTGTCTTTGAGTCTTTGCTTCATCCTTCACAATACCGAACAAGACTTTGTAAAGACGAGCTTAAGTGTTCTAGGAAAGTGTGTTTCTTTGCACATAAACCTGAAGAGTTGCGCCCTATGTTTGCTTCTACCGGTTCAGCTTTGCCTTCACAAGAATCCTTACCAGTTTCAAATGTTTCAACACCAGTAATGTCTCCCTTGGTAGCTGGTTCGCCCCCTAAGAGCGGAAACTTGTGGCAGAATAAAATCAATCAATCTCCACCTTCATTGCAACTTCCACGTAGCCACCAGCTTAAAAATACTTTGAGTGCAAAGGATTTGTATCAGGAAATGGCACTTCTTGGTATAGAAAGAGCTACTAGTCGTCAACAACAACAACAGCAACAACAATTGATTGAAGAAATTCTTTCAATGCAACCTTCAACTCCTACTCAATTTCAATCAATGAGTAGGCTTCAGTTGAACCAAAACAGGAACAATGTTCAAGCAAGTTATCCATTCAACAACATTGTTTCCTCTCCTATGAGAAAATCATCACCATTTGGATTTGAATCATCAGCTGCAGTGGCTACAGCAGTGATGAACTCAAGATCATCAGCCTTTGCAACACGAAGCCAAAGTTTTATGGATCGCGGTGCGGCAAGACACCATCTTGGTGCTTCCAACCCCAATGGGAGGATGAACCCTGAACAATGGAATGATGTGAACAAGTTCCAGAAATCTGTTTCTTTTGGTTCTAGACATAATGGAGTAGCTGCCTCACCCTTGGCACGTCAGCGGCAGCCAGAATATGTTGAACCAGATATCTCATGGGTTCATTCACTTGTTAAAGACGTTTCTTCTGAGAGTTCTGAGATGTTTGGTGCTGAGAAGCAACATTATGATCTCTATAAACAGATGTTATCACCATGGACAGAGCAGATTGCAGCATAA 1614 0.399 MENNFKLTSVLLELSATDDIEAFKKEVEEKGCDVNEAGFWYCRKLGSKKMCYEKRTPLMVASLFGSKRVVKYIIQSNMVDVSMPIGCENVTALHCAVSGGSESTLEIVKLLVDAGAHIDCLDDIIKQKLLVANPKELLGGEKKEYAVDISLPDINDGVFGTDEFRMYSFKVKTCSRGYSHDWTVCPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKKDACEYSHGVFESLLHPSQYRTRLCKDELKCSRKVCFFAHKPEELRPMFASTGSALPSQESLPVSNVSTPVMSPLVAGSPPKSGNLWQNKINQSPPSLQLPRSHQLKNTLSAKDLYQEMALLGIERATSRQQQQQQQQLIEEILSMQPSTPTQFQSMSRLQLNQNRNNVQASYPFNNIVSSPMRKSSPFGFESSAAVATAVMNSRSSAFATRSQSFMDRGAARHHLGASNPNGRMNPEQWNDVNKFQKSVSFGSRHNGVAASPLARQRQPEYVEPDISWVHSLVKDVSSESSEMFGAEKQHYDLYKQMLSPWTEQIAA 537
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02099 537 Gene3D - 8 135 IPR036770 -
Trre5g02099 537 SMART ANK_2a 88 120 IPR002110 GO:0005515
Trre5g02099 537 SMART ANK_2a 53 83 IPR002110 GO:0005515
Trre5g02099 537 ProSiteProfiles Ankyrin repeat profile. 88 123 IPR002110 GO:0005515
Trre5g02099 537 PANTHER UNKEMPT FAMILY MEMBER 13 505 IPR045234 -
Trre5g02099 537 SMART c3hfinal6 238 261 IPR000571 GO:0046872
Trre5g02099 537 SMART c3hfinal6 203 229 IPR000571 GO:0046872
Trre5g02099 537 ProSiteProfiles Ankyrin repeat region circular profile. 88 123 - -
Trre5g02099 537 Pfam Ankyrin repeats (3 copies) 27 120 IPR002110 GO:0005515
Trre5g02099 537 Gene3D - 205 266 - -
Trre5g02099 537 FunFam Zinc finger CCCH domain-containing protein 66 161 229 - -
Trre5g02099 537 ProSiteProfiles Zinc finger C3H1-type profile. 203 230 IPR000571 GO:0046872
Trre5g02099 537 SUPERFAMILY Ankyrin repeat 10 124 IPR036770 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre5g02099 Trre-Chr5 15660150 15661763 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02099 138 508 C2H2 Transcription Factor Family AT5G12850 38.462 5.75e-77 254
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre5g02099 Ank_2 8.2e-09 CL0465
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02099 - - tpra:123894788 952.584