Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02098 ATGAGTTCCGGCGAATTGGGTTGCATCTACGCCACTTTGATTCTCCACGATGACGGAATCGCAATCACCGCGGAGAAGATCAGCACTTTGTTGAAGGCTGCTAATGTCACCGTTGAATCCTACTGGCCAAGCCTATTCGCTAAGCTTGCTCAGAGCAGGAACGTTGACGATCTCGTTTTGAACTCTGGCGCTGCCGGTGGTGCCGCCGTTGTCTCAGCAGCACCTGCTGCTGGTGGTGGTGCCGCAGCAGCTGCCGCACCTGCCGTCGAGGAGAAGAAGGAAGAGGCAAAGGAAGAAAGTGATGATGACATGGGTTTTAGTCTGTTTGATTAA 333 0.5315 MSSGELGCIYATLILHDDGIAITAEKISTLLKAANVTVESYWPSLFAKLAQSRNVDDLVLNSGAAGGAAVVSAAPAAGGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02098 110 FunFam 60S acidic ribosomal protein P1 1 63 - -
Trre5g02098 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 110 - -
Trre5g02098 110 CDD Ribosomal_P1 5 61 - -
Trre5g02098 110 MobiDBLite consensus disorder prediction 88 104 - -
Trre5g02098 110 Pfam 60s Acidic ribosomal protein 22 109 - -
Trre5g02098 110 MobiDBLite consensus disorder prediction 84 110 - -
Trre5g02098 110 Hamap 50S ribosomal protein L12 [rpl12]. 6 110 IPR027534 GO:0003735|GO:0005840|GO:0006414
Trre5g02098 110 Gene3D - 1 63 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02098 Trre-Chr5 15647360 15648665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02098 1 110 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 56.637 3.08e-39 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02098 K02942 - rcu:8269526 128.642