Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02097 ATGGAAAATAAGTTCCAAACCTCAGTTTTACTTGAATTATCAGCAACAGATGATGTTGAAGCATTCAAAAGGGAAGTGGAAGAAAAGGATTGTGATGTAAATGAAGCTGGGTTTTGGTATTGTAGAAAATTAGGATCTAAGAAGATGTGTTATGAAAAGAGAACACCTCTTATGGTTGCTTCTTTGTTTGGAAGCAAAAGGGTTGTCAAATATATCATTCAATCAAACATGGTTGATGTAAGCATGCCAATTGGTTGTGAAAATGTCACTGCTTTACATTGTGCTGTTTCTGGTGGCTCTGAATCAACTCTTGAGATTGTTAAGCTCTTGGTTGATGCTGGAGCTGATATTGATTGTCTTGATGACATAATTAAGCAGAAGTTATTGGTGGCTAATCCTAAAGAATTATTAGGAGATGAATTTAGAATGTATAGTTTCAAGGTGAAGACTTGTTCAAGGGGTTACTCTCATGATTGGACTGTTTGTCCATTTGTTCATCCAGGGGAGAATGCTAGAAGGAGAGACCCAAGAAAGTATCCTTATAGTTGTGTTCCATGCCCCGAGTTTCGCAAAGGGACATGCCAGAAGAAAGATGCATGTGAGTATTCACATGGTGTCTTTGAATCTTTGCTTCATCCTTCACAATACAGAACAAGGCTTTGTAAAGATGAGCTTAAGTGTTCTAGAAAAGTGTGTTTCTTTGCACATAAACCTGAAGAGTTACGCCCTTTGTATGCTTCTACTGGTTCAGCAATACCTTCACAAGAATCCTTACCGATTTCAAATGTTTCAACTCCAGTTATGTCTCCCTCGGTAGCTGGTTCATCTCCTAAGAGTGGAAACTTATGGCAGAATAAAATCAATCAATCTCCACCTTCATTGCAACTTCCACATAGTCACCAGTTGAAAAGTACTTCAAGTGCAAAGGATTTGTATCTAGAAATGGCACTTCTTGGTATAGAAAGAGCTACTAGTCGTCAACAACAACAGCAGTTGATGGAAGAAATTCTTTCAATGCAACCTTCAACTCCTACTCAATTTCAATCCATGAGTAGGCTTCAGTTGAACCAAAACAGGAACACTGTTCAAGCAAGTTATCCATTCAACAAATCATCACCATTTAGATTTGACTCATCAGCTGCAGTGGCTACAGCAGTGATGAACTCAAGATCATCAGCCTTTACAACACGAAGCCAAAGTTTTATGGATCGCGGTGTGGCAAGACACCATCTTGGTGCTTCCAAACCCAATGGAAGGATGAACTTTGAACATTGGGATGATGTGAACAAGTTCCAAAAATCTGTTTCTTTTGGGTCTAGACATAACGGGGTAGCTGCCTCACCCTTGGCACGGCAGCCAGGATATGCGGAACCAGATATCTCGTGGGTTCATTCTCTTGTTAAAGATGTTTCTTCCGAGAGTTCTGAGATGTTTGGTTCTGAGAAGCAACATTATGATCTCTATAAACAAATGTTATCACCATGGGCAGAGCAGATTGTAGCATAA 1506 0.3958 MENKFQTSVLLELSATDDVEAFKREVEEKDCDVNEAGFWYCRKLGSKKMCYEKRTPLMVASLFGSKRVVKYIIQSNMVDVSMPIGCENVTALHCAVSGGSESTLEIVKLLVDAGADIDCLDDIIKQKLLVANPKELLGDEFRMYSFKVKTCSRGYSHDWTVCPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKKDACEYSHGVFESLLHPSQYRTRLCKDELKCSRKVCFFAHKPEELRPLYASTGSAIPSQESLPISNVSTPVMSPSVAGSSPKSGNLWQNKINQSPPSLQLPHSHQLKSTSSAKDLYLEMALLGIERATSRQQQQQLMEEILSMQPSTPTQFQSMSRLQLNQNRNTVQASYPFNKSSPFRFDSSAAVATAVMNSRSSAFTTRSQSFMDRGVARHHLGASKPNGRMNFEHWDDVNKFQKSVSFGSRHNGVAASPLARQPGYAEPDISWVHSLVKDVSSESSEMFGSEKQHYDLYKQMLSPWAEQIVA 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02097 501 MobiDBLite consensus disorder prediction 262 299 - -
Trre5g02097 501 Gene3D - 1 134 IPR036770 -
Trre5g02097 501 ProSiteProfiles Ankyrin repeat region circular profile. 87 122 - -
Trre5g02097 501 SMART ANK_2a 87 119 IPR002110 GO:0005515
Trre5g02097 501 SMART ANK_2a 52 82 IPR002110 GO:0005515
Trre5g02097 501 Pfam Ankyrin repeats (3 copies) 41 119 IPR002110 GO:0005515
Trre5g02097 501 Gene3D - 182 243 - -
Trre5g02097 501 ProSiteProfiles Zinc finger C3H1-type profile. 180 207 IPR000571 GO:0046872
Trre5g02097 501 ProSiteProfiles Ankyrin repeat profile. 87 122 IPR002110 GO:0005515
Trre5g02097 501 FunFam Zinc finger CCCH domain-containing protein 66 138 206 - -
Trre5g02097 501 SMART c3hfinal6 215 238 IPR000571 GO:0046872
Trre5g02097 501 SMART c3hfinal6 180 206 IPR000571 GO:0046872
Trre5g02097 501 SUPERFAMILY Ankyrin repeat 6 123 IPR036770 -
Trre5g02097 501 PANTHER UNKEMPT FAMILY MEMBER 12 469 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02097 Trre-Chr5 15640599 15642170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02097 139 400 C2H2 Transcription Factor Family AT5G12850 44.097 1.08e-65 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre5g02097 Ank_2 5.3e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02097 - - tpra:123894788 910.983