Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02082 ATGGCAAATTACTATGAAATTGATGACATTTTGGTGGAGGAAGAGATTGTGTCAGTTGTATTTCAGAAGGCAGCATCTGGAGTGGGAATAGATCCCAGTTCTGAGACAGACTTTATTGAAGCTGGTTCAAAGGTTGAACTGCCTTTTTGGCTTGCTCATGAGTTACAGTTGAGACAAGCAGTATCAGTCAATGTTCCCCCTTGTTTCAATCAAAAAACAAGACTAGAGATCCAAGCTGATTGTGCATGTGTAGATCTGAGGTCCAGATGCCCATACTTTTATGAATTTGGTTGCAAGATAGCACCAATAGTTGGCGATAGAACCATCGGGTTTCTGTTGTTGTCTGCATTTAAGAATAGGTACAGGGAGGTCCTCACAAAGGCGCACACTGCAGCAATTGCTGCTGGTTCCAAATTTTGGACTATCCTAACAAATGAAGAGATCAATTTGTATGAGACAGCTCAATCCGCAATGGCATCCTTCAAAAAGTGGAGAATGGGCGGGGCTAGATTTCAGATAGCATCTATTCTCGGAAGAAAGAGAAAACCAACTGAGTAG 558 0.4211 MANYYEIDDILVEEEIVSVVFQKAASGVGIDPSSETDFIEAGSKVELPFWLAHELQLRQAVSVNVPPCFNQKTRLEIQADCACVDLRSRCPYFYEFGCKIAPIVGDRTIGFLLLSAFKNRYREVLTKAHTAAIAAGSKFWTILTNEEINLYETAQSAMASFKKWRMGGARFQIASILGRKRKPTE 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02082 185 Gene3D - 2 166 IPR038437 -
Trre5g02082 185 SUPERFAMILY PriA/YqbF domain 1 66 - -
Trre5g02082 185 SUPERFAMILY GINS helical bundle-like 65 166 IPR036224 -
Trre5g02082 185 Pfam GINS complex protein 45 147 IPR021151 -
Trre5g02082 185 CDD GINS_B_Psf3 4 66 - -
Trre5g02082 185 PANTHER UNCHARACTERIZED 1 184 IPR010492 -
Trre5g02082 185 CDD GINS_A_psf3 61 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02082 Trre-Chr5 15496669 15498824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02082 1 182 Core DNA Replication Machinery Family AT3G55490 69.780 6.06e-96 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02082 K10734 - gmx:100799874 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02082 5 15496669 15498824 Trre5g02082 5 15496669 15498824 ECH