Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02078 ATGGATGATGCACATAAACATGTCTTGCGTTCAAAAGTTTCTGTATGTTACTCAACGGGTGTGTCTAATGGCAATGATATATGGCAAAGTGATAGCGTTTTACCATTTTTCCTGCCTAGTTTTGCAGCTCAAATTGCTTTCATGTTGTTCACTAATCGCTTTTTGTACTATCTCCTTAGACCCTTTAATCAACCTCGTCTCGTTGCTGAGATTTTGACAGGTTTCTTGTTAAGTCCAGAAATACTTGGGAAAACAAAATTTATTGAACATTTGGTCCCTCTAAAGTTAGTGATAGCAAGTGATACAATATCATATATTGGACTAGTTTACTATGTATTCCTTGCTGGCTTAGACATGAACTTGGAAACTATCATGAAAGCAAGAAAAAAGGCTACAAGCATTGCTGTTGCAGGCACTATAATTCCAATGGTAATGGGGGGTGCAATATACACTTTGTTTCAAAGCATGTTAACAGCAAGTCCTGAATATTTCTCACAATACAACACACCTAAAGCTTATTTATTTTGGACATTAATCTTTAGTGTCACTGGTTTTCCAATTGTTACTCAAATCCTAGCAGATTTGAAACTCCTCTATACAGGTTTAGGTAGAGTGGCTTTAACAGCAGCAATGATTAATGACTTCATCAATTGGATTATGTTTGCTTTGTTGATTCCTTTTGAACATGATGAAAAGGTTGCTATCTACTCATTTTTAAGTACAATAGCATTTATCTTTATTTGTTTCGTCGTGATTCGGCCTTATCTCGTTGAGTTAATTGTTCAAAAAACAAAACAGAATGATTGGGACAATTATCAGTTGTTTTTTGTTGTCATGGGTGCTTATGTTTGTGCAACTGTTACTGATCTTCTTGGAACACATCCTGTTGTTGGGGCTTTAGTGTATGGAATAATGCTTCCGCGCGGTAAATTTACCAATATGTTGATAGAGAAGACAGAAGATTTTGGATCTGTTTATCTAGTTCCACTCTTCTTTGCTACCTGTGGTATGAGACTTCAAATATTTGCTGTCATTAAAGCTCAAGGTTTGGCAATTGTGGCTATGGTTTTGGTCTTGTCATTTATCCCTAAGATTCTAAGCACTGTCATAGCAACAAGGTTCTTTGGTATGCCTGCTCTTGATGGTGTGGCTATTGGATTGCTTATGAACACCAAAGGCATCTTACCTCTAATAATGCTCAACCTTGCCTGGGACAAACAGATTTTGAGTGTGGAGTCCTCCTCAATTATGATGGTATCTGTTCTTATAATGACAGTAGCAGTACCTCTTATAATTAATGCCATATACAAACCAAGAAAGATATACAAGCAAAACAAGCTAAGGACAATACAGAATTTAAAGGTTGAAGCAGAGCTAAAAGTTTTAGCTTGTGTTCACAACCCTCGTCATGCCACAGGATTCATCAACATTCTCGAAGCTTCTAACGCCATGAAAATCTCTTCTTTACGCATATTCGCTCTTCAACTAGTTGAATTAACAGGAACGAAAATATCCCTTTTAGCAGCACACATCAACACACAAAGTGCTTCAGAAGCCCTCACACAGTCAGAAGAAGACTTAGAAAACATAACACTCACTTTCAAAGACTATGAAGAACAAAATGAAAACACTAGGGTTGAAACACTTGCTGCAGTTTCAACCTATTCAACTATTCATCAAGACATACACATTGTAGCACAGGAAAAGCAAGCAACATTGATTCTCCTTCCTTTTCACAAACAACCAAATATTGAAAGTATCCTAGAAACAACAAATGAAGCCTTTCAAAATATAAACCAAAATGTGATGAGAGAGGCGCCATGTTCTGTTGGAATCTTCGTTGATCGCGGTCTCGGTTCATTGTTCAAAGTTAATTTACGTGTACTCATGCTTTTCATTGGCGGTCCTGATGACCGCGAAGCATTAGCATTGGCATGGAGGATGTCGAAGCATGAATCAATTCAACTATCTGTTGTGAGAGTTCATCTGTTAGGACAAGCTACAGAAGTTGATTCATCACCACAAGCAGAATCGAGAGGACTATTATCTGCAGTGTTGGATAGTGAAAAGCAAAAGGAGCTTGATGATAAATATGTGAATACTTTTAGACTCAAAGCACTGCACAGTAAGGATTCTACAAGTTATTCAGACAAAGAAGTTAATTCTCGCGAAGACCTTGCTCAAGTGTTGAATGACTTGGACAAATATGGATATGATTTGTACATTCTAGGACAAGGGACAGGTAGAAATTCTTCAGTGTTCTCGGAGTTAATGAAATGGACCGATTGTCCTGAACTTGGTGTTATAGGAGACATGGTGGCATCAAATAATTTTGGTTCGTGTTCTTCATTACTTGTTGTACAACAGTATGGGTTTGGCGGAATGGTTTTTGAGAATAACACTCATTCTCAACATCATGGTCATGGTCAAGGACCTAAAAATGATCATGATGATGATGATGATAGTGAATCTGGGAATGTTTTTGTGAGGGTAGAATAA 2499 0.3741 MDDAHKHVLRSKVSVCYSTGVSNGNDIWQSDSVLPFFLPSFAAQIAFMLFTNRFLYYLLRPFNQPRLVAEILTGFLLSPEILGKTKFIEHLVPLKLVIASDTISYIGLVYYVFLAGLDMNLETIMKARKKATSIAVAGTIIPMVMGGAIYTLFQSMLTASPEYFSQYNTPKAYLFWTLIFSVTGFPIVTQILADLKLLYTGLGRVALTAAMINDFINWIMFALLIPFEHDEKVAIYSFLSTIAFIFICFVVIRPYLVELIVQKTKQNDWDNYQLFFVVMGAYVCATVTDLLGTHPVVGALVYGIMLPRGKFTNMLIEKTEDFGSVYLVPLFFATCGMRLQIFAVIKAQGLAIVAMVLVLSFIPKILSTVIATRFFGMPALDGVAIGLLMNTKGILPLIMLNLAWDKQILSVESSSIMMVSVLIMTVAVPLIINAIYKPRKIYKQNKLRTIQNLKVEAELKVLACVHNPRHATGFINILEASNAMKISSLRIFALQLVELTGTKISLLAAHINTQSASEALTQSEEDLENITLTFKDYEEQNENTRVETLAAVSTYSTIHQDIHIVAQEKQATLILLPFHKQPNIESILETTNEAFQNINQNVMREAPCSVGIFVDRGLGSLFKVNLRVLMLFIGGPDDREALALAWRMSKHESIQLSVVRVHLLGQATEVDSSPQAESRGLLSAVLDSEKQKELDDKYVNTFRLKALHSKDSTSYSDKEVNSREDLAQVLNDLDKYGYDLYILGQGTGRNSSVFSELMKWTDCPELGVIGDMVASNNFGSCSSLLVVQQYGFGGMVFENNTHSQHHGHGQGPKNDHDDDDDSESGNVFVRVE 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02078 832 PANTHER CATION/H + ANTIPORTER 15 790 - -
Trre5g02078 832 MobiDBLite consensus disorder prediction 808 832 - -
Trre5g02078 832 MobiDBLite consensus disorder prediction 801 832 - -
Trre5g02078 832 Gene3D - 40 445 IPR038770 -
Trre5g02078 832 Pfam Sodium/hydrogen exchanger family 48 433 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre5g02078 832 Coils Coil 520 547 - -
Trre5g02078 832 Gene3D - 490 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02078 Trre-Chr5 15468166 15471121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02078 15 790 Antiporter Super Family AT2G13620 37.786 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02078 - K26731 gmx:100802381 1090.1