Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02072 ATGGCCACCACAACCGCCGCCGCCACGTCACACTTTTTCGGCACTCGTCTCTGCAACAAACCAACCTCAAACATGGGAAGAGTCCGTGCATTCTTCAACCTCCCCGGCAAATTAAAACCACAACCAAAGAAAAAGGAAGTAAAAAAAGTGAGACAACCGGAAAGTGATGGACTCGTGTGGTTTCCTGGTGCACAGCCACCGGAATGGCTCGACGGAACAATGATCGGTGACCGTGGATTTGATCCATTGGGATTCGCTAAACCGGCGGAGTATTTACAGTTTGAACTTGACTCACTTGATCAGAATCTGGCTAAGAACCTTGCTGGTGATATAATTGGAACTAGGGTGGAAAGTACGGAGGTTAACCCGACGCCTTTTCAGCCGTACACGGAGGTTTTCGGAATTCAGAGGTTTCGTGAGTGTGAAGTTATTCATGGAAGGTGGGCCATGCTTGGTGCTCTTGGTGCTTTGGCTGTTGAAGCTTTTACTGGTGTCGCATGGCAAGATGCTGGAAAGGTAGAGCTTGTAGAAGGGTCATCCTACTTTGGATTACCACTTCCATTCTCAATTAGCACATTGATATGGATTGAAGTATTAGTAATTGGGTACATTGAGTTTCAAAGGAATGCAGAGCTTGACCCAGAGAAAAGGCTATACCCTGGTGGAAAATTCTTTGATCCTCTTGGTTTAGCCAGTGACCCTGAAGAGAAAGAAAGACTTCAACTTGCAGAGATTAAGCATTCTCGTTTGGCTATGATTGTCTTCCTCATCTTTGCTATTCAAGCTGCTGTTACAGGAAAAGGACCTATTGGTTTCATTGCTACCTTCAACCAGTGA 837 0.4576 MATTTAAATSHFFGTRLCNKPTSNMGRVRAFFNLPGKLKPQPKKKEVKKVRQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFELDSLDQNLAKNLAGDIIGTRVESTEVNPTPFQPYTEVFGIQRFRECEVIHGRWAMLGALGALAVEAFTGVAWQDAGKVELVEGSSYFGLPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLASDPEEKERLQLAEIKHSRLAMIVFLIFAIQAAVTGKGPIGFIATFNQ 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02072 278 Gene3D Chlorophyll a/b binding protein domain 57 278 - -
Trre5g02072 278 SUPERFAMILY Chlorophyll a-b binding protein 55 275 - -
Trre5g02072 278 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 19 274 IPR001344 GO:0009765|GO:0016020
Trre5g02072 278 Pfam Chlorophyll A-B binding protein 66 262 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02072 Trre-Chr5 15381681 15384326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02072 13 275 Chloroplast and Mitochondria Gene Families AT3G08940 68.821 6.38e-130 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02072 K08915 - gmx:100820335 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02072 5 15381681 15384326 Trre5g02072 5 15381681 15384326 ECH