Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02054 ATGGAGGCAAAGGAACAAGATGTTTCATTGGGAGCTAACAAATACCCAGAGAGACAACCAATTGGTATTGCAGCTCAGAGCCATGATGATGGAAAGGACTACAAGGAACCACCACCAGCACCTTTGTTTGAGCCTTCTGAACTCACTTCTTGGTCTTTCTACAGAGCTGGGATAGCTGAGTTTGTGGCCACTTTTCTGTTTCTGTATATCACCATCTTGACTGTTATGGGTGTTAGCAGATCTGAATCCAAGTGTAAATCTGTTGGTATTCAAGGGATTGCTTGGTCTTTTGGTGGTATGATCTTTGCTCTTGTTTACTGCACAGCTGGAATCTCAGGGGGTCACATAAACCCAGCAGTGACATTCGGTTTGTTCTTGGCAAGGAAATTGTCTCTAACTAGAGCAGTGTTCTACATCGTCATGCAGACCCTTGGTGCTATCGTTGGTGCTGGTGTTGTTAAGGGTTTTGAGGGAAAGACTTTGTACGGTAAATTGAACGGTGGTGCCAACTTTGTTGCTCCTGGTTACACAAAAGGTGATGGACTTGGTGCTGAGATTGTTGGTACCTTTGTTCTTGTCTACACCGTATTCTCCGCCACTGATGCCAAGCGTAGCGCCAGAGACTCTCACGTTCCTATTTTGGCACCTTTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCCACTATCCCAATCACTGGAACTGGTATCAACCCTGCTAGAAGTCTTGGTGCTGCAATTATCTTCAACAAAGATCTTGGTTGGGATGATCATTGGATTTTCTGGGTTGGACCATTCATTGGTGCAGCACTTGCAGCCCTTTATCACACAGTTGTGATCAGAGCAATTCCTTTCAAATCAAGTTAA 870 0.4517 MEAKEQDVSLGANKYPERQPIGIAAQSHDDGKDYKEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVSRSESKCKSVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQTLGAIVGAGVVKGFEGKTLYGKLNGGANFVAPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHWIFWVGPFIGAALAALYHTVVIRAIPFKSS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02054 289 Gene3D Glycerol uptake facilitator protein. 40 288 IPR023271 -
Trre5g02054 289 MobiDBLite consensus disorder prediction 1 37 - -
Trre5g02054 289 FunFam Probable aquaporin PIP1-2 40 289 - -
Trre5g02054 289 NCBIfam MIP family channel protein 59 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g02054 289 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g02054 289 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g02054 289 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g02054 289 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g02054 289 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g02054 289 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g02054 289 SUPERFAMILY Aquaporin-like 47 282 IPR023271 -
Trre5g02054 289 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Trre5g02054 289 CDD MIP 55 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g02054 289 Pfam Major intrinsic protein 47 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g02054 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 285 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02054 Trre-Chr5 15294995 15297192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02054 1 289 Major Intrinsic Protein MIP AT4G23400 84.775 8.44e-169 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02054 K09872 - gmx:100791447 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02054 5 15294995 15297192 Trre5g02054 5 15294995 15297192 ECH
Trre5g02054 5 15294995 15297192 Trre9g04327 9 51096366 51098643 PCT