Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02052 ATGGGAGATGAAATCAAGGAAAACGTGAAAGGTGAGTTACAAAAGCAAATCAAGTATAGAGGAGTGAGGGTAAGGCCATGGGGAAAATTTGCGGCGGAGATACGAGATTCGGCTAGACATGGAGCTCGAGTTTGGCTTGGTACATTTAATACTGCTGAAGAAGCTGCGAGAGCTTACGATCGTGCTGCTTTTGATATGAGAGGTTCTTCGGCTATTCTTAACTTTCCACATGAACATTTTCCATGCAATGTGGTTTGTAATCCTTCTAAGCCCACTTCTTCCTCGAATTCAACCTCATCATCTTCAAAGGTTAAATCAGAGCTTGGTGAACAAGTTATCGAGTTTGAGTATTTGGATGAGAAATTGTTAGAGGAACTCTTGGATTGTGAGAATACTATCAATCACAATTGGTTCAAGTAG 420 0.4095 MGDEIKENVKGELQKQIKYRGVRVRPWGKFAAEIRDSARHGARVWLGTFNTAEEAARAYDRAAFDMRGSSAILNFPHEHFPCNVVCNPSKPTSSSNSTSSSSKVKSELGEQVIEFEYLDEKLLEELLDCENTINHNWFK 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02052 139 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Trre5g02052 139 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Trre5g02052 139 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Trre5g02052 139 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Trre5g02052 139 PANTHER DNA-BINDING DOMAIN 14 128 IPR044808 GO:0003700|GO:0009873
Trre5g02052 139 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Trre5g02052 139 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
Trre5g02052 139 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Trre5g02052 139 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Trre5g02052 139 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02052 Trre-Chr5 15275050 15275469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02052 15 130 AP2-EREBP Transcription Factor Family AT3G23230 61.667 4.96e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre5g02052 AP2 4.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02052 - - cam:101512924 176.792