Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02051 ATGGCACAATCTTCTTCACACTATGCTTTAACAATATTTGCAATTGTTGTACTAAGCATTTTAGCCATTGCTTTCATATTTATCAACTACTTGATTCTTGTCACCAAATGTTGCTTAAATTGGCATCCATTGAGATGGTTTTCCATTCTACCACCTCAACAAAATGAAGAGCCATTCATAGCATTCTCTCCGAGGATTTGGAACCGCGGTGTCGATGAATCAGTCATCAAAGAAATCCCAACATTTCGATTCACAAAAAGAGGTGATAATAATGATGATCATCAAACTGTAAAAGGTTGTGTTGTCTGTTTGAATTCTTTCCAAGAACAAGATATGTTAAAAGTACTTCCAAATTGCAGCCACCATTTTCATTTGGATTGCATTAACATTTGGCTTCAAACAAATGCTAATTGCCCTCTTTGTAGAACAAGCATTTCAGGCAACACGCAGTTTCCGACGAACCATGTCATACCAGCTCCAAGCTCTTCTCCACAGGATTCTCAGTTACTCTCTAACATAGGTAGTGATGAAGATTATGTGGTCATTGAATTGTGGGGAGAAGGAGGGAATCGAGGAACAATGTCACGTATGCAGCACGAAAGAAACGAACCGACAGAAAGACTAGAATCACTGAGTAGAACTCATTCTACAACTAGGAAAATGGAAGAGGAGAAGAAGTTGGTGCAGTTGAAACCATGGAAGTGTCACCATGGTTCCATAATGGATGATGAGTGTATTGATGTTAGAAAGAAAGATGAACAGTTTTCTTCTATTCAGCCTATTAGAAGATCTTTCTCATTGGATTCTGCAAGTGACAGAAAAGTTTACTTGGATGTTCAAGATATCATTCAACAGAATAATAGGCATCAAAGTAAGGATTGTGGTAATGAAGATTGTAATAGTAGCAGAAGTAGAAGACCATTCTTTCCATTTCGGTATGGTAGGGGATAA 951 0.3785 MAQSSSHYALTIFAIVVLSILAIAFIFINYLILVTKCCLNWHPLRWFSILPPQQNEEPFIAFSPRIWNRGVDESVIKEIPTFRFTKRGDNNDDHQTVKGCVVCLNSFQEQDMLKVLPNCSHHFHLDCINIWLQTNANCPLCRTSISGNTQFPTNHVIPAPSSSPQDSQLLSNIGSDEDYVVIELWGEGGNRGTMSRMQHERNEPTERLESLSRTHSTTRKMEEEKKLVQLKPWKCHHGSIMDDECIDVRKKDEQFSSIQPIRRSFSLDSASDRKVYLDVQDIIQQNNRHQSKDCGNEDCNSSRSRRPFFPFRYGRG 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02051 316 PANTHER RING-H2 FINGER PROTEIN ATL16 3 316 IPR044600 GO:0016567|GO:0016740
Trre5g02051 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 147 IPR013083 -
Trre5g02051 316 SMART ring_2 100 141 IPR001841 -
Trre5g02051 316 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Trre5g02051 316 Pfam Ring finger domain 100 142 IPR001841 -
Trre5g02051 316 MobiDBLite consensus disorder prediction 191 223 - -
Trre5g02051 316 MobiDBLite consensus disorder prediction 194 223 - -
Trre5g02051 316 SUPERFAMILY RING/U-box 75 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02051 Trre-Chr5 15269036 15269986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02051 4 289 C3H Transcription Factor Family AT1G04360 42.715 3.42e-73 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02051 K19041 - psat:127126067 473.781