Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02048 ATGGCTACCAAAAAGCCTCATGCAGTCTGTGTTGCATTTCCAGCACAAGGTATCAAATCAGTGAATGACATTGCAGAGTTCGAATTCGAGACTATACCTGAAGGACTTCTACCATCTGATAAAGATGCAACTCAAGATCCTACAGAGCTATGTGACTCAATAAGGAATAATTGTTTCATTCCATTTAGGGACTTGTTGAGTAACATTGTTTCCTCCGTCGATGTTCCTCCAGACGTGTGTGATTGCGGATGGATCATATCCCGAACTTATCAAAAGAAGCATGCTACCATTCAAATTTGTGGGTCCCACTTAGGAGACCAACCGAAAGACAAAAATTTTTTACCCTTCATCACCGTTGAACTTCCGTTGAAATTGCGCCGCAAGACAACCCGCAACATTGCCCCGCCGCTACCTCCGGTGACAACCGCAGCCACCGCCAAATTCAAGCAGGTTTGTATAGTTATCATGCTGCAAGAAGTTTTGCCACTACCGGAAGGTGTAAAAATTTTCAAACCCTCCGATTATGTTTTGCTTGGGTTTGGAGGTAGTGGTGCATTTGGTGTTATTCATAAGGTTAAGCACACTGTGTCTGGTGACACATTTGCTCAAAAAACGCTTGATTTTAAAAATGAAAGAGATAAGAGGGATGTGGCTTCTAACGAGTTGGATATATTGAAATCATTGAATAATGAAAATGTGCTTGGCTGTTTAGGTTTGTTTTCAGCTCCGGGTGAGATAAAGATATTGATGGAATTGATGGACTCGGATATGAGGCCTTTTATGAGTAAAGATGAGAAGTTGCTTGCTAAGGTTGCGGTTAAAGTGTTGAGTGGATTGAAATATCTCAGAGAAAACTCGATTTTGCATCTGGATATAAATCCGGCAAATTTGTTAAGGAAATCGGGAACTGATATCATCAAAATTGCCGATTTTGGTTGTAGTATTAATTTGTCTACCGCTGCGGAAAAAGTTGTTTATGAAGTAGGAACTCGACTTTATGGAGCGCCGGAAATCTATTGTAATGGCGGCATTACATTGTCTCCAACATCGCCTCAATCGGTGTTTAGTTGCGATATTTTCAGCTTTGGGGTCTCAATGTTGAAATTTTTTGAAGGGAAACTTCCACCTAATAAATACCCTGTTTGGTACCTTGTCGATCGGAATAAGTTTTGCCTTCCGCATTATATCACGAATGCTTCGGAAAACTTTCAGAAATTTCTTGAGTGTTGCTTGCATAAAGATCCGGCGAAGCGATCTACGGTGGAAGAGTTGCTGGCTCATCCATTTATTACTGAGAATCAGGAGCAGGGATCAACATTCCCCTCACTGAAGGACATGGACTTGCATCAACATCAAGAACAAAAAGATGGGAATTATGCCGAGAAGAAGGGGTTACGTTCTGGTGTTACTTCAGGAGGCTGCATAGTAATCGAAACAGCTGGAGAAGGTGCACTTCCTGAGTTATATAAGGTCATGGAGTCCGGAATCTTGAAAGGGACTAATTCAACTGATCAGAAAGTTGTATGGTTCAGTTCTTAA 1539 0.4139 MATKKPHAVCVAFPAQGIKSVNDIAEFEFETIPEGLLPSDKDATQDPTELCDSIRNNCFIPFRDLLSNIVSSVDVPPDVCDCGWIISRTYQKKHATIQICGSHLGDQPKDKNFLPFITVELPLKLRRKTTRNIAPPLPPVTTAATAKFKQVCIVIMLQEVLPLPEGVKIFKPSDYVLLGFGGSGAFGVIHKVKHTVSGDTFAQKTLDFKNERDKRDVASNELDILKSLNNENVLGCLGLFSAPGEIKILMELMDSDMRPFMSKDEKLLAKVAVKVLSGLKYLRENSILHLDINPANLLRKSGTDIIKIADFGCSINLSTAAEKVVYEVGTRLYGAPEIYCNGGITLSPTSPQSVFSCDIFSFGVSMLKFFEGKLPPNKYPVWYLVDRNKFCLPHYITNASENFQKFLECCLHKDPAKRSTVEELLAHPFITENQEQGSTFPSLKDMDLHQHQEQKDGNYAEKKGLRSGVTSGGCIVIETAGEGALPELYKVMESGILKGTNSTDQKVVWFSS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02048 512 Gene3D Transferase(Phosphotransferase) domain 1 252 469 - -
Trre5g02048 512 SUPERFAMILY Protein kinase-like (PK-like) 171 440 IPR011009 -
Trre5g02048 512 Pfam Protein kinase domain 182 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02048 512 ProSiteProfiles Protein kinase domain profile. 175 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02048 512 Gene3D Glycogen Phosphorylase B; 18 86 - -
Trre5g02048 512 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 146 454 - -
Trre5g02048 512 Gene3D Phosphorylase Kinase; domain 1 156 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02048 Trre-Chr5 15247629 15251862 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02048 182 446 MAP Kinase Kinase Gene Family AT3G21220 34.296 3.65e-40 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trre5g02048 Pkinase 7.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02048 K13413 - psom:113301319 152.525