Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02042 ATGTTGTTTTTCAATGATTTGTGCTGGAAAGAAGAAGGGAAGGTTTGGATTCCGAAAGGGGTCCCAACATTCGATTGGGACGATTACAAGTGCGTCGAAGAGTTGGGCAGAAGTGGGAGAGGATTTTCTTACAAGGTTCAACAAATTTCGACGGGGAAGTTCTTTGCCATCAAAAAGGTTTTGATATATGCGGATGAGGAAGATGATCAAGACCACAAGGAACGTATTATGTATGATATGATTCTAGCTACATCTATTGATCATCCCAATATTATGAAATGTCTAGGTGTGTGTATGAATCAATGTGGTGTTCATTTTCTCTATAATTGGATGCCTGGCAATTTGTGTAATCTTGGTATAATACGAGATGAGTCACATCTTGCTCAAATAGCATATCAGGTTTTGAAAGGGTTAAAATATTTGAGAAACGGAAAGGGCTTCGAGTTTAGGCATGGGTCAAATTATTTGAGAAACCAAAAGGGCTTTGTGTTTAGGCATCTCACCCCAGGCAATTTATTGTTCGATCCATCCTCCTCCTTAGTTAAGATTGATGATGTTGGGACTGTTAAGGATAGGTATATTTATCTGTATTCGCTTCCTATCCAGTCATGCTATATGAAGTACATTGCCCCGGAGAATTTTCACATAGAACCTATCGATGATGATGAAGAACAAGACTGTACCCTGCAATCTGATCGATACACTAAAAGTGATGCCTGGAGTTTGGGACTTTGTTTACTGGAATTTTATAATGGGACATTCCCGTTTGATGGTAATTATACAGAGCTTCTGAGGTATCTGTTATCAGGTATTAATCTTGAATATGGTAAGTCAGAGTTAGATGAATTTCAAAGATTTGGTGTAGATGAGCTTCTTAAACACGACTTCATCACCACTTACTGTGCTGTATTATCTGAACAAGGTGACAGTTCTGATGACACCAAAGTTTCCGATGAGTCTATATATGAATATGATCACCTGGAATTGCCCACAAGTTCTGAACATGATGGTAACATAGAACACCACAACAAGAAACTCAGATTGAGTGCTGAAACTAGTGCATGA 1065 0.3859 MLFFNDLCWKEEGKVWIPKGVPTFDWDDYKCVEELGRSGRGFSYKVQQISTGKFFAIKKVLIYADEEDDQDHKERIMYDMILATSIDHPNIMKCLGVCMNQCGVHFLYNWMPGNLCNLGIIRDESHLAQIAYQVLKGLKYLRNGKGFEFRHGSNYLRNQKGFVFRHLTPGNLLFDPSSSLVKIDDVGTVKDRYIYLYSLPIQSCYMKYIAPENFHIEPIDDDEEQDCTLQSDRYTKSDAWSLGLCLLEFYNGTFPFDGNYTELLRYLLSGINLEYGKSELDEFQRFGVDELLKHDFITTYCAVLSEQGDSSDDTKVSDESIYEYDHLELPTSSEHDGNIEHHNKKLRLSAETSA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02042 354 Pfam Protein kinase domain 29 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02042 354 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 26 299 - -
Trre5g02042 354 ProSiteProfiles Protein kinase domain profile. 29 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02042 354 SUPERFAMILY Protein kinase-like (PK-like) 24 302 IPR011009 -
Trre5g02042 354 SMART serkin_6 29 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g02042 354 Gene3D Transferase(Phosphotransferase) domain 1 25 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02042 Trre-Chr5 15195940 15199990 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02042 32 297 MAP Kinase Kinase Gene Family AT3G21220 27.526 7.26e-20 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trre5g02042 Pkinase 6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02042 - - twl:120010199 91.6633