Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02029 ATGATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGGAGAAAATGTGTTAGAGGTTGTGTTTTTGCACCTTACTTTTGTCATGAACAAGGTGCTACTCATTTTGCAGCTATTCATAAGGTCTTTGGTGCAAGTAATGTCTCAAAACTTCTTGCACACCTCCCTGTTAGTGATCGTTGCGAAGCTGCGGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGATGTGTTGCTCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAACTAGCTTATATGAAGGAACAAGCAGCTCAAAGGTGTCTCAATACCTCAATAATTGAAAACCCTAATGAGAAGAACTTCGTAAAACCTAGTAATATTCTCCCTCAAGATCTTCAAATCCAGATGGAAAATTATTCCTACATATGTCCTCAATTTCTTCCCAACTTGTCCTCATCATCCACTACTAATCTATCAACAACACATTATTATAATGAGAATAGTACCACTCTCATGGATCTAAACCCTATAATTGGAAACTATGAAAATTCAGGAGCTTTAGAAGAAAGCATCTCATCATTTTCTAACTTTGATGAGAGATGTAATAACTCAATGTCCTATGACAACATGCAAAGGCAGTGGAACTTTCATGAAGTGCATAACCTTCAGTAA 690 0.3768 MMTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLAYMKEQAAQRCLNTSIIENPNEKNFVKPSNILPQDLQIQMENYSYICPQFLPNLSSSSTTNLSTTHYYNENSTTLMDLNPIIGNYENSGALEESISSFSNFDERCNNSMSYDNMQRQWNFHEVHNLQ 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02029 229 Pfam Lateral organ boundaries (LOB) domain 8 106 IPR004883 -
Trre5g02029 229 Coils Coil 88 108 - -
Trre5g02029 229 PANTHER LOB DOMAIN CONTAINING PROTEIN 2 208 - -
Trre5g02029 229 ProSiteProfiles LOB domain profile. 7 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02029 Trre-Chr5 15128501 15129657 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02029 8 123 AS2 family AT3G58190 80.508 7.00e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre5g02029 LOB 6.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02029 K13945 - gmx:100776678 321.627