Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02028 ATGGCTTCTTCAAATGGAACTAGCTCTGGAACTGGTTCTCCTTGTGGAGCATGCAAGTTCCTAAGAAGAAAATGTGCACCTGATTGCATTTTTGCACCTTACTTTTGCTCAGAACAAGGTCCTGCAAGATTTGCAGCTATTCATAAAGTGTTTGGTGCTAGCAATGTTTCTAAGTTACTTTTGCATATACCAGCTCATGAACGTTGTGAAGCTGTTGTTACAATTGCTTATGAGGCTCAAGCTCGTATTAGAGACCCTGTTTATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTAGCATGCTTGCAGGCACAATTGATTCAAGTGAAATCTCAGCTGTCACATAACATAGACAATAATCAATGGATAGGGAATAATAATGTTGCTACAACACAACCAATGAATTATCCATTTTGTCCAACTTATATGAATCCTATATCTCCTCAAAGCTCACTTGAGTCATCAATTGATCATAGTAGCAGCATGAATGATGGAATGATGAGCATGCAAGATGTACAAAGTAGTAGAGAAGATTTCTCATTCCAAGCTTGTAATAATTCTAAGAAAAAAATGTCATATAATAATTATCATCATGACTTGGGAGAGTTGCAAGAGATTGCACTTAGGATGATGAGGAATTTTGACTAG 654 0.3746 MASSNGTSSGTGSPCGACKFLRRKCAPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHERCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLIQVKSQLSHNIDNNQWIGNNNVATTQPMNYPFCPTYMNPISPQSSLESSIDHSSSMNDGMMSMQDVQSSREDFSFQACNNSKKKMSYNNYHHDLGELQEIALRMMRNFD 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02028 217 ProSiteProfiles LOB domain profile. 13 115 IPR004883 -
Trre5g02028 217 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 206 - -
Trre5g02028 217 Pfam Lateral organ boundaries (LOB) domain 14 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02028 Trre-Chr5 15111464 15112843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02028 1 215 AS2 family AT2G42430 53.441 5.24e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre5g02028 LOB 2.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02028 K13944 - gmx:100801508 319.316