Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02024 ATGGCGTCAACCAATCGCACAGTGTTGCAATTCTCTTCATCTTCTTCGCCTTCTCAGAGCTTATCCGCTAAGGTTCATCCTCTTGTTGTCTTCAACATCTGCGACTGTTACGTTCGTCGCCCTGATCAAGCCGAACGCGTCATTGGAACACTTCTTGGATCTGTTCTTCCTGATGGAACCGTCGATATCCGTAATTCATATGCCGTTCCTCACAGCGAGTCTGCCGATCAGGTTGCTTTGGACATAGAGTACCACCATAATATGTTATTGTCCCACCAAAAAGTGAATCAAAAGGAAGTCATAGTTGGATGGTATTCAACTGGACATGGAGTAACCGGTGGAAGTGCATTGATCCATGAATTTTATTCTCGAGAAGTACCCAATCCCATTCATTTGACTGTTGACACAGGATTCATAACTGGAGAGGGTACCATAAAAGCTCATGTGGCAAACAATTTATCTCTTGGAGATAGGCAAATTGCTGCACAGTTTCAAGAAATTCCATTGGATCTTCGTATGGTTGAAGCTGAGCGAGTTGGATTTGATATCCTAAAGGCAACCGCTGTTGACAAAATTCCCTCTGATTTAGAAGGCATGGAAGCATCAATGGAACATCTGCTAGCTTTGATTGATGACATCTACAAATATGTCGATGATGTTGTGGAAGGGCGAGTCGCACCAGACAACAAAATTGGGAAATTTATTTCTGATGCAGTAGGTTCTCTTCCCAAATTACCGCCATCAGATTTCGATAAGCTTATCAATGACAGCTTGCAGGATCACTTGCTCATGCTATATTTATCTAGCATCACAAGAACTCAACTTAGCCTGGCTGAAAAATTGAACACCGCTGCGCAGATTTTGTAA 867 0.4279 MASTNRTVLQFSSSSSPSQSLSAKVHPLVVFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHSESADQVALDIEYHHNMLLSHQKVNQKEVIVGWYSTGHGVTGGSALIHEFYSREVPNPIHLTVDTGFITGEGTIKAHVANNLSLGDRQIAAQFQEIPLDLRMVEAERVGFDILKATAVDKIPSDLEGMEASMEHLLALIDDIYKYVDDVVEGRVAPDNKIGKFISDAVGSLPKLPPSDFDKLINDSLQDHLLMLYLSSITRTQLSLAEKLNTAAQIL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02024 288 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 21 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre5g02024 288 CDD MPN_eIF3f 24 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre5g02024 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 11 285 - -
Trre5g02024 288 SMART pad1_6 22 153 IPR000555 GO:0005515|GO:0008233|GO:0008237
Trre5g02024 288 FunFam Eukaryotic translation initiation factor 3 subunit F 9 189 - -
Trre5g02024 288 Gene3D Cytidine Deaminase, domain 2 10 189 - -
Trre5g02024 288 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g02024 288 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 21 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Trre5g02024 288 Pfam Maintenance of mitochondrial structure and function 175 281 IPR024969 -
Trre5g02024 288 ProSiteProfiles MPN domain profile. 23 154 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02024 Trre-Chr5 15076534 15079872 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02024 2 288 Eukaryotic Initiation Factors Gene Family AT2G39990 75.258 1.55e-159 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02024 K03249 - gmx:100790913 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02024 5 15076534 15079872 Trre5g02024 5 15076534 15079872 ECH