Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02023 ATGGATGAGGGAATGTCAGGCTTTTGTATTAGAAATGGAAGTGTTCGTGGCAGTAGTGGAACAAAATGTGGTCGTTGGAATCCAACTACTGAACAAGTTAAGGTTCTGACTGAACTTTTTAGTTCAGGACTCCGTACACCAAGTACTGATCAGATTCAAAAGATTTCTAATCAGCTTAGTTTTTATGGTAAGATTGAGAGTAAGAATGTTTTTTATTGGTTTCAAAATCATAAGGCTAGAGAAAGACAGAAGCGTCGTCGTAGGGTTTCGTCTTCTGATGATGACGATGATGATAGTAGTAATAAGGATGTTATTCGTCGTGCAAATGCTATGTCGGTTAATTCTTCTACACAAAATTTTGGTCAGGTCTATATGGTTTCAGAGCCCAAGAGGGTGATTGAGACACTTGAGCTCTTTCCCTTGAACTCATTTGGTGAATCAGAATCAAAGAATTTGAGGGTCTATGCAAATGAATGCAGAGATAATATGTTTTCATACACAATGAGGGAACAAATGGATCACCCACCATTAGATCTTTGCTTGAGTTTTATGTAA 555 0.3766 MDEGMSGFCIRNGSVRGSSGTKCGRWNPTTEQVKVLTELFSSGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKRRRRVSSSDDDDDDSSNKDVIRRANAMSVNSSTQNFGQVYMVSEPKRVIETLELFPLNSFGESESKNLRVYANECRDNMFSYTMREQMDHPPLDLCLSFM 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02023 184 CDD homeodomain 25 79 IPR001356 GO:0003677
Trre5g02023 184 SUPERFAMILY Homeodomain-like 24 86 IPR009057 -
Trre5g02023 184 Gene3D - 22 89 - -
Trre5g02023 184 SMART HOX_1 21 88 IPR001356 GO:0003677
Trre5g02023 184 MobiDBLite consensus disorder prediction 83 102 - -
Trre5g02023 184 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 17 108 IPR044555 GO:0003700|GO:0099402
Trre5g02023 184 MobiDBLite consensus disorder prediction 86 102 - -
Trre5g02023 184 FunFam WUSCHEL-related homeobox 11 22 90 - -
Trre5g02023 184 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Trre5g02023 184 Pfam Homeodomain 23 83 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02023 Trre-Chr5 15069562 15070422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02023 8 184 Wox Gene Family AT3G11260 49.485 1.03e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre5g02023 Homeodomain 2.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02023 - - gmx:100791433 257.299